MirGeneDB 2.1

MirGeneDB ID

Gmo-Let-7-P2c3

Family name LET-7 (all species)
Seed GAGGUAG
Species Cod (Gadus morhua)
MiRBase ID gmo-let-7j
Paralogues Gmo-Let-7-P1b1  Gmo-Let-7-P1b2  Gmo-Let-7-P1c2  Gmo-Let-7-P1d1  Gmo-Let-7-P1d2  Gmo-Let-7-P2a1a  Gmo-Let-7-P2a2a  Gmo-Let-7-P2a3a  Gmo-Let-7-P2a3b  Gmo-Let-7-P2a4a  Gmo-Let-7-P2a4b  Gmo-Let-7-P2b1a  Gmo-Let-7-P2b2a  Gmo-Let-7-P2b3a  Gmo-Let-7-P2b3b  Gmo-Let-7-P2b4a  Gmo-Let-7-P2b4b  Gmo-Let-7-P2c2a  Gmo-Let-7-P2c2b 
Orthologues Aae-Let-7  Aca-Let-7-P2c3  Ami-Let-7-P2c3  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P2c3  Cfa-Let-7-P2c3  Cgi-Let-7  Cli-Let-7-P2c3  Cmi-Let-7-P2c3  Cpi-Let-7-P2c3  Cpo-Let-7-P2c3  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2c3  Dpu-Let-7  Dre-Let-7-P2c3  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P2c3  Gga-Let-7-P2c3  Gja-Let-7-P2c3  Hme-Let-7  Hsa-Let-7-P2c3  Isc-Let-7  Lan-Let-7  Lch-Let-7-P2c3  Lgi-Let-7  Loc-Let-7-P2c3  Mal-Let-7-P2c3  Mdo-Let-7-P2c3  Mml-Let-7-P2c3  Mmu-Let-7-P2c3  Mun-Let-7-P2c3  Npo-Let-7  Oan-Let-7-P2c3  Obi-Let-7  Ocu-Let-7-P2c3  Ovu-Let-7  Pbv-Let-7-P2c3  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P2c3  Sha-Let-7-P2c3  Sko-Let-7  Spt-Let-7-P2c3  Spu-Let-7  Sto-Let-7-P2c3  Tca-Let-7  Tgu-Let-7-P2c3  Tni-Let-7-P2c3  Xbo-Let-7  Xla-Let-7-P2c3c  Xla-Let-7-P2c3d  Xtr-Let-7-P2c3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_169: 9149-9226 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUCUGGAGGACCUACUGCUCACUUUGGUCUGAGGUAGUUGUUUGUACAGUUUGAGGGUCCAUGAUUCUGCCCCAUACAGGAGCUAACUGUACAAGUGACUGCCUUGCCCAAGGCUGUGCCUGCCCAUCUCAACUGUC
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Structure
        10         20         30        40        50        60         
CGUCUGGAGGACCUACU-  U  -|     UC         UG           UGAGGGUCCAUGAUUC 
                  GC CA CUUUGG  UGAGGUAGU  UUUGUACAGUU                \
                  CG GU GGAACC  GUUCCGUCA  GAACAUGUCAA                U
CUGUCAACUCUACCCGUC  U  C^     C-         GU           UCGAGGACAUACCCCG 
      130       120       110        100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Let-7-P2c3_5p

mirBase accessionMIMAT0044137
Sequence
0- UGAGGUAGUUGUUUGUACAGUU -22
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Star sequence

Gmo-Let-7-P2c3_3p*

mirBase accessionMIMAT0044138
Sequence
57- CUGUACAAGUGACUGCCUUGC -78
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