Let-7-P2c3

MirGeneDB ID

Gga-Let-7-P2c3

Family name

LET-7 (all species)

Seed

GAGGUAG

Species

Chicken (Gallus gallus)

MiRBase ID

gga-let-7g

Paralogues

Gga-Let-7-P1c Gga-Let-7-P1d Gga-Let-7-P2a1 Gga-Let-7-P2a2 Gga-Let-7-P2a4 Gga-Let-7-P2b1 Gga-Let-7-P2b2 Gga-Let-7-P2b4 Gga-Let-7-P2c1 Gga-Let-7-P2c2

Orthologues

Aae-Let-7 Aca-Let-7-P2c3 Aga-Let-7 Agr-Let-7 Ami-Let-7-P2c3 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P2c3 Cfa-Let-7-P2c3 Cja-Let-7-P2c3 Cli-Let-7-P2c3 Cmi-Let-7-P2c3 Cpi-Let-7-P2c3 Cpo-Let-7-P2c3 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P2c3 Dpu-Let-7 Dre-Let-7-P2c3 Dsi-Let-7 Dya-Let-7 Eba-Let-7 Eca-Let-7-P2c3 Egr-Let-7 Esc-Let-7 Ete-Let-7-P2c3 Gja-Let-7-P2c3 Gmo-Let-7-P2c3 Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P2c3 Isc-Let-7 Laf-Let-7-P2c3 Lan-Let-7 Lch-Let-7-P2c3 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P2c3 Mal-Let-7-P2c3 Mdo-Let-7-P2c3 Mgi-Let-7 Mml-Let-7-P2c3 Mmr-Let-7-P2c3 Mmu-Let-7-P2c3 Mom-Let-7 Mun-Let-7-P2c3 Npo-Let-7 Oan-Let-7-P2c3 Obi-Let-7 Ocu-Let-7-P2c3 Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P2c3 Pau-Let-7 Pbv-Let-7-P2c3 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P2c3 Rph-Let-7 Sha-Let-7-P2c3 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P2c3 Spu-Let-7 Sro-Let-7 Sto-Let-7-P2c3 Tca-Let-7 Tgu-Let-7-P2c3 Tni-Let-7-P2c3 Tur-Let-7 War-Let-7 Xbo-Let-7 Xla-Let-7-P2c3c Xla-Let-7-P2c3d Xtr-Let-7-P2c3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

12: 3389994-3390071 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Let-7-P2c3)

Let-7-P2c3 12: 3389994-3390071 [-] UCSC Ensembl
Mir-135-P1 12: 3411670-3411730 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAAUGUAGUUCCUCUUGCCUGAUUCCAGGCUGAGGUAGUAGUUUGUACAGUUUGAGGGUCUAUGAUACCACCCGGUACAGGAGAUAACUGUACAGGCCACUGCCUUGCCUGGGACAGAGCUCUGCCAACAAGAAGGAU

Get precursor sequence

Structure

        10           20        30        40        50        60         
GAAUGUAGUUCCUCUUGC---|  A        U        A            UGAGGGUCUAUGAUAC 
                     CUG UUCCAGGC GAGGUAGU GUUUGUACAGUU                \
                     GAC AGGGUCCG UUCCGUCA CGGACAUGUCAA                C
UAGGAAGAACAACCGUCUCGA^  -        -        C            UAGAGGACAUGGCCCA 
      130       120        110        100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Let-7-P2c3_5p

mirBase accession

MIMAT0001160

Sequence

0- UGAGGUAGUAGUUUGUACAGUU -22

Get sequence

Proposed targets

TargetScanVert: gga-let-7g-5p
miRDB: MIMAT0001160

Star sequence

Gga-Let-7-P2c3_3p*

mirBase accession

MIMAT0026527

Sequence

57- CUGUACAGGCCACUGCCUUGC -78

Get sequence

Proposed targets

TargetScanVert: gga-let-7g-3p
miRDB: MIMAT0026527