MirGeneDB 2.1
MirGeneDB ID

Gga-Let-7-P2c3

Family name LET-7 (all species)
Seed GAGGUAG
Species Chicken (Gallus gallus)
MiRBase ID gga-let-7g
Paralogues Gga-Let-7-P1c  Gga-Let-7-P1d  Gga-Let-7-P2a1  Gga-Let-7-P2a2  Gga-Let-7-P2a4  Gga-Let-7-P2b1  Gga-Let-7-P2b2  Gga-Let-7-P2b4  Gga-Let-7-P2c1  Gga-Let-7-P2c2 
Orthologues Aae-Let-7  Aca-Let-7-P2c3  Ami-Let-7-P2c3  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P2c3  Cfa-Let-7-P2c3  Cgi-Let-7  Cli-Let-7-P2c3  Cmi-Let-7-P2c3  Cpi-Let-7-P2c3  Cpo-Let-7-P2c3  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2c3  Dpu-Let-7  Dre-Let-7-P2c3  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P2c3  Gja-Let-7-P2c3  Gmo-Let-7-P2c3  Hme-Let-7  Hsa-Let-7-P2c3  Isc-Let-7  Lan-Let-7  Lch-Let-7-P2c3  Lgi-Let-7  Loc-Let-7-P2c3  Mal-Let-7-P2c3  Mdo-Let-7-P2c3  Mml-Let-7-P2c3  Mmu-Let-7-P2c3  Mun-Let-7-P2c3  Npo-Let-7  Oan-Let-7-P2c3  Obi-Let-7  Ocu-Let-7-P2c3  Ovu-Let-7  Pbv-Let-7-P2c3  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P2c3  Sha-Let-7-P2c3  Sko-Let-7  Spt-Let-7-P2c3  Spu-Let-7  Sto-Let-7-P2c3  Tca-Let-7  Tgu-Let-7-P2c3  Tni-Let-7-P2c3  Xbo-Let-7  Xla-Let-7-P2c3c  Xla-Let-7-P2c3d  Xtr-Let-7-P2c3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(Gallus_gallus.GRCg6a)		 12: 3389994-3390071 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P2c3)		 Let-7-P2c3 12: 3389994-3390071 [-] UCSC Ensembl
Mir-135-P1 12: 3411670-3411730 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAUGUAGUUCCUCUUGCCUGAUUCCAGGCUGAGGUAGUAGUUUGUACAGUUUGAGGGUCUAUGAUACCACCCGGUACAGGAGAUAACUGUACAGGCCACUGCCUUGCCUGGGACAGAGCUCUGCCAACAAGAAGGAU
Get precursor sequence
Structure
        10           20        30        40        50        60         
GAAUGUAGUUCCUCUUGC---|  A        U        A            UGAGGGUCUAUGAUAC 
                     CUG UUCCAGGC GAGGUAGU GUUUGUACAGUU                \
                     GAC AGGGUCCG UUCCGUCA CGGACAUGUCAA                C
UAGGAAGAACAACCGUCUCGA^  -        -        C            UAGAGGACAUGGCCCA 
      130       120        110        100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Ad Br Br Ce Ce Ce Ce Ch He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Let-7-P2c3_5p
mirBase accessionMIMAT0001160
Sequence 
0- UGAGGUAGUAGUUUGUACAGUU -22
Get sequence
Proposed targets TargetScanVert: gga-let-7g-5p
miRDB: MIMAT0001160
Star sequence

Gga-Let-7-P2c3_3p*
mirBase accessionMIMAT0026527
Sequence 
57- CUGUACAGGCCACUGCCUUGC -78
Get sequence
Proposed targets TargetScanVert: gga-let-7g-3p
miRDB: MIMAT0026527