Let-7-P2a2

MirGeneDB ID

Gga-Let-7-P2a2

Family name

LET-7 (all species)

Seed

GAGGUAG

Species

Chicken (Gallus gallus)

MiRBase ID

gga-let-7a-3

Paralogues

Gga-Let-7-P1c Gga-Let-7-P1d Gga-Let-7-P2a1 Gga-Let-7-P2a4 Gga-Let-7-P2b1 Gga-Let-7-P2b2 Gga-Let-7-P2b4 Gga-Let-7-P2c1 Gga-Let-7-P2c2 Gga-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P2a2 Aga-Let-7 Agr-Let-7 Ami-Let-7-P2a2 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P2a2 Cfa-Let-7-P2a2 Cja-Let-7-P2a2 Cli-Let-7-P2a2 Cmi-Let-7-P2a2 Cpi-Let-7-P2a2 Cpo-Let-7-P2a2 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P2a2 Dpu-Let-7 Dre-Let-7-P2a2a Dre-Let-7-P2a2b Dsi-Let-7 Dya-Let-7 Eba-Let-7 Eca-Let-7-P2a2 Egr-Let-7 Esc-Let-7 Ete-Let-7-P2a2 Gja-Let-7-P2a2 Gmo-Let-7-P2a2a Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P2a2 Isc-Let-7 Laf-Let-7-P2a2 Lan-Let-7 Lch-Let-7-P2a2 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P2a2 Mal-Let-7-P2a2a Mal-Let-7-P2a2b Mdo-Let-7-P2a2 Mgi-Let-7 Mml-Let-7-P2a2 Mmr-Let-7-P2a2 Mmu-Let-7-P2a2 Mom-Let-7 Mun-Let-7-P2a2 Neu-Let-7-P2a2 Npo-Let-7 Oan-Let-7-P2a2 Obi-Let-7 Ocu-Let-7-P2a2 Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P2a2 Pau-Let-7 Pbv-Let-7-P2a2 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P2a2 Rph-Let-7 Sha-Let-7-P2a2 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P2a2 Spu-Let-7 Sro-Let-7 Sto-Let-7-P2a2 Tca-Let-7 Tgu-Let-7-P2a2 Tni-Let-7-P2a2a Tni-Let-7-P2a2b Tur-Let-7 War-Let-7 Xbo-Let-7 Xla-Let-7-P2a2c Xla-Let-7-P2a2d Xtr-Let-7-P2a2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

1: 71198830-71198900 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Let-7-P2a2)

Let-7-P2a2 1: 71198830-71198900 [+] UCSC Ensembl
Let-7-P2b2 1: 71199661-71199737 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGUGAUCGGAGUCUGACUGUCCUUUGGGGUGAGGUAGUAGGUUGUAUAGUUUUAGGGUUAUGCCCUGCCUGUCAGAUAACUAUACAAUCUACUGUCUUUCCUGAAGUGGCUGUGAUAUCAUCGCUGGAUA

Get precursor sequence

Structure

        10         20         30        40        50        60     
CUGUGAUCGGAGUCUGACU-   -|  UG   U   GU                UUAGGGUUAUGC 
                    GUC CUU  GGG GAG  AGUAGGUUGUAUAGUU            C
                    CGG GAA  CCU UUC  UCAUCUAACAUAUCAA            C
AUAGGUCGCUACUAUAGUGU   U^  GU   -   UG                UAGACUGUCCGU 
 .       120       110       100         90        80        70

Deep sequencing

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3' NTU

Yes

Motifs

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Let-7-P2a2_5p

mirBase accession

MIMAT0001101

Sequence

0- UGAGGUAGUAGGUUGUAUAGUU -22

Get sequence

Proposed targets

TargetScanVert: gga-let-7a-5p
miRDB: MIMAT0001101

Star sequence

Gga-Let-7-P2a2_3p*

mirBase accession

MIMAT0026491

Sequence

50- CUAUACAAUCUACUGUCUUUC -71

Get sequence

Proposed targets

TargetScanVert: gga-let-7a-3p
miRDB: MIMAT0026491