MirGeneDB 2.1

MirGeneDB ID

Xla-Let-7-P2a2d

Family name LET-7 (all species)
Seed GAGGUAG
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-let-7e
Paralogues Xla-Let-7-P1b3  Xla-Let-7-P1b4  Xla-Let-7-P1c3  Xla-Let-7-P1c4  Xla-Let-7-P2a1c  Xla-Let-7-P2a1d  Xla-Let-7-P2a2c  Xla-Let-7-P2a3d  Xla-Let-7-P2b2c  Xla-Let-7-P2b2d  Xla-Let-7-P2b3c  Xla-Let-7-P2b3d  Xla-Let-7-P2c2  Xla-Let-7-P2c3c  Xla-Let-7-P2c3d  Xla-Let-7-P2c4 
Orthologues Aae-Let-7  Aca-Let-7-P2a2  Ami-Let-7-P2a2  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P2a2  Cfa-Let-7-P2a2  Cgi-Let-7  Cli-Let-7-P2a2  Cmi-Let-7-P2a2  Cpi-Let-7-P2a2  Cpo-Let-7-P2a2  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2a2  Dpu-Let-7  Dre-Let-7-P2a2a  Dre-Let-7-P2a2b  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P2a2  Gga-Let-7-P2a2  Gja-Let-7-P2a2  Gmo-Let-7-P2a2a  Hme-Let-7  Hsa-Let-7-P2a2  Isc-Let-7  Lan-Let-7  Lch-Let-7-P2a2  Lgi-Let-7  Loc-Let-7-P2a2  Mal-Let-7-P2a2a  Mal-Let-7-P2a2b  Mdo-Let-7-P2a2  Mml-Let-7-P2a2  Mmu-Let-7-P2a2  Mun-Let-7-P2a2  Npo-Let-7  Oan-Let-7-P2a2  Obi-Let-7  Ocu-Let-7-P2a2  Ovu-Let-7  Pbv-Let-7-P2a2  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P2a2  Sha-Let-7-P2a2  Sko-Let-7  Spt-Let-7-P2a2  Spu-Let-7  Sto-Let-7-P2a2  Tca-Let-7  Tgu-Let-7-P2a2  Tni-Let-7-P2a2a  Tni-Let-7-P2a2b  Xbo-Let-7  Xtr-Let-7-P2a2 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)
NC_030729.1: 1729619-1729688 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCUUCCCAGAUUCCAACUGCCCUUUGGGGUGAGGUAGUAGGUUGUUUAGUUGUGGGUUGCACCCCGACAUUUGGAGAACUAUACAAUCUACUGUCUUUCCUGAAGUGGCUGUGAUGUCAUCGCUGGAGC
Get precursor sequence
Structure
        10         20         30        40        50        60     
CUCUUCCCAGAUUCCAACU-   -|  UG   U   GU          U     GUGGGUUGCACC 
                    GCC CUU  GGG GAG  AGUAGGUUGU UAGUU            \
                    CGG GAA  CCU UUC  UCAUCUAACA AUCAA            C
CGAGGUCGCUACUGUAGUGU   U^  GU   -   UG          U     GAGGUUUACAGC 
.       120       110       100         90        80        70
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsUGUG in loop
Tissue expression
 +
Eg He Re St St St St
Mature sequence

Xla-Let-7-P2a2d_5p

mirBase accessionMIMAT0046401
Sequence
0- UGAGGUAGUAGGUUGUUUAGUU -22
Get sequence
Star sequence

Xla-Let-7-P2a2d_3p*

mirBase accessionMIMAT0046402
Sequence
49- CUAUACAAUCUACUGUCUUUC -70
Get sequence