Let-7-P2a1d

MirGeneDB ID

Xla-Let-7-P2a1d

Family name

LET-7 (all species)

Seed

GAGGUAG

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Let-7-P1b3 Xla-Let-7-P1b4 Xla-Let-7-P1c3 Xla-Let-7-P1c4 Xla-Let-7-P2a1c Xla-Let-7-P2a2c Xla-Let-7-P2a2d Xla-Let-7-P2a3d Xla-Let-7-P2b2c Xla-Let-7-P2b2d Xla-Let-7-P2b3c Xla-Let-7-P2b3d Xla-Let-7-P2c2 Xla-Let-7-P2c3c Xla-Let-7-P2c3d Xla-Let-7-P2c4

Orthologues

Aae-Let-7 Aca-Let-7-P2a1 Aga-Let-7 Agr-Let-7 Ami-Let-7-P2a1 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P2a1 Cfa-Let-7-P2a1 Cja-Let-7-P2a1 Cli-Let-7-P2a1 Cmi-Let-7-P2a1 Cpi-Let-7-P2a1 Cpo-Let-7-P2a1 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P2a1 Dpu-Let-7 Dre-Let-7-P2a1a Dsi-Let-7 Dya-Let-7 Eba-Let-7 Eca-Let-7-P2a1 Egr-Let-7 Esc-Let-7 Ete-Let-7-P2a1 Gga-Let-7-P2a1 Gja-Let-7-P2a1 Gmo-Let-7-P2a1a Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P2a1 Isc-Let-7 Laf-Let-7-P2a1 Lan-Let-7 Lch-Let-7-P2a1 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P2a1 Mal-Let-7-P2a1a Mdo-Let-7-P2a1 Mgi-Let-7 Mml-Let-7-P2a1 Mmr-Let-7-P2a1 Mmu-Let-7-P2a1 Mom-Let-7 Mun-Let-7-P2a1 Npo-Let-7 Oan-Let-7-P2a1 Obi-Let-7 Ocu-Let-7-P2a1 Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P2a1 Pau-Let-7 Pbv-Let-7-P2a1 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P2a1 Rph-Let-7 Sha-Let-7-P2a1 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P2a1 Spu-Let-7 Sro-Let-7 Sto-Let-7-P2a1 Tca-Let-7 Tgu-Let-7-P2a1 Tur-Let-7 War-Let-7 Xbo-Let-7 Xtr-Let-7-P2a1

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NW_016694823.1: 891780-891851 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUUCCUGCGUAACGACCCCGCACUGUGGGAUGAGGUAGUAGGUUGUUUAGUUAUUGGGCCUUGCCCACCACUGGGAGAGAACUACACAACCUACUGUCUCUCCUAAAGUUGUGGAAAUCCCCUCACGUCACC

Get precursor sequence

Structure

        10         20         30        40        50        60      
AUUCCUGCGUAACGACC-    -|  G     U   GU          U     AUUGGGCCUUGCC 
                  CCGC ACU UGGGA GAG  AGUAGGUUGU UAGUU             \
                  GGUG UGA AUCCU CUC  UCAUCCAACA AUCAA             C
CCACUGCACUCCCCUAAA    U^  A     -   UG          C     GAGAGGGUCACCA 
130       120       110        100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Em

Mature sequence

Xla-Let-7-P2a1d_5p

mirBase accession

None

Sequence

0- UGAGGUAGUAGGUUGUUUAGUU -22

Get sequence

Star sequence

Xla-Let-7-P2a1d_3p* (predicted)

mirBase accession

None

Sequence

51- CUACACAACCUACUGUCUCUC -72

Get sequence