Let-7-P2a1

MirGeneDB ID

Cfa-Let-7-P2a1

Family name

LET-7 (all species)

Seed

GAGGUAG

Species

Dog (Canis familiaris)

MiRBase ID

Paralogues

Cfa-Let-7-P1b Cfa-Let-7-P1c Cfa-Let-7-P1d Cfa-Let-7-P2a2 Cfa-Let-7-P2a3 Cfa-Let-7-P2b1 Cfa-Let-7-P2b2 Cfa-Let-7-P2b3 Cfa-Let-7-P2c1 Cfa-Let-7-P2c2 Cfa-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P2a1 Aga-Let-7 Agr-Let-7 Ami-Let-7-P2a1 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P2a1 Cja-Let-7-P2a1 Cli-Let-7-P2a1 Cmi-Let-7-P2a1 Cpi-Let-7-P2a1 Cpo-Let-7-P2a1 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P2a1 Dpu-Let-7 Dre-Let-7-P2a1a Dsi-Let-7 Dya-Let-7 Eba-Let-7 Eca-Let-7-P2a1 Egr-Let-7 Esc-Let-7 Ete-Let-7-P2a1 Gga-Let-7-P2a1 Gja-Let-7-P2a1 Gmo-Let-7-P2a1a Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P2a1 Isc-Let-7 Laf-Let-7-P2a1 Lan-Let-7 Lch-Let-7-P2a1 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P2a1 Mal-Let-7-P2a1a Mdo-Let-7-P2a1 Mgi-Let-7 Mml-Let-7-P2a1 Mmr-Let-7-P2a1 Mmu-Let-7-P2a1 Mom-Let-7 Mun-Let-7-P2a1 Npo-Let-7 Oan-Let-7-P2a1 Obi-Let-7 Ocu-Let-7-P2a1 Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P2a1 Pau-Let-7 Pbv-Let-7-P2a1 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P2a1 Rph-Let-7 Sha-Let-7-P2a1 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P2a1 Spu-Let-7 Sro-Let-7 Sto-Let-7-P2a1 Tca-Let-7 Tgu-Let-7-P2a1 Tur-Let-7 War-Let-7 Xbo-Let-7 Xla-Let-7-P2a1c Xla-Let-7-P2a1d Xtr-Let-7-P2a1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(canFam3_add)

chr1: 97904315-97904386 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Let-7-P2a1)

Let-7-P2c1 chr1: 97902046-97902120 [-] UCSC Ensembl
Let-7-P2b1 chr1: 97903932-97904008 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUACCCUGGACCUUUCUCUUCACUGUGGGAUGAGGUAGUAGGUUGUAUAGUUUUAGGGUCACACCCACCACUGGGAGAUAACUAUACAAUCUACUGUCUUUCCUAACGUGAUAGAAAAAUCUGCAUCCCAGC

Get precursor sequence

Structure

        10          20        30        40        50        60      
UUACCCUGGACCUUUCU-  -|   UG     U   GU                UUAGGGUCACACC 
                  CU UCAC  UGGGA GAG  AGUAGGUUGUAUAGUU             \
                  GA AGUG  AUCCU UUC  UCAUCUAACAUAUCAA             C
CGACCCUACGUCUAAAAA  U^   CA     -   UG                UAGAGGGUCACCA 
130       120       110        100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Let-7-P2a1_5p

mirBase accession

None

Sequence

0- UGAGGUAGUAGGUUGUAUAGUU -22

Get sequence

Star sequence

Cfa-Let-7-P2a1_3p*

mirBase accession

None

Sequence

51- CUAUACAAUCUACUGUCUUUC -72

Get sequence