Let-7-P2a1

MirGeneDB ID

Bta-Let-7-P2a1

Family name

LET-7 (all species)

Seed

GAGGUAG

Species

Cow (Bos taurus)

MiRBase ID

bta-let-7a-1

Paralogues

Bta-Let-7-P1b Bta-Let-7-P1c Bta-Let-7-P1d Bta-Let-7-P2a2 Bta-Let-7-P2a3 Bta-Let-7-P2b1 Bta-Let-7-P2b2 Bta-Let-7-P2b3 Bta-Let-7-P2c1 Bta-Let-7-P2c2 Bta-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P2a1 Aga-Let-7 Agr-Let-7 Ami-Let-7-P2a1 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Cfa-Let-7-P2a1 Cja-Let-7-P2a1 Cli-Let-7-P2a1 Cmi-Let-7-P2a1 Cpi-Let-7-P2a1 Cpo-Let-7-P2a1 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P2a1 Dpu-Let-7 Dre-Let-7-P2a1a Dsi-Let-7 Dya-Let-7 Eba-Let-7 Eca-Let-7-P2a1 Egr-Let-7 Esc-Let-7 Ete-Let-7-P2a1 Gga-Let-7-P2a1 Gja-Let-7-P2a1 Gmo-Let-7-P2a1a Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P2a1 Isc-Let-7 Laf-Let-7-P2a1 Lan-Let-7 Lch-Let-7-P2a1 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P2a1 Mal-Let-7-P2a1a Mdo-Let-7-P2a1 Mgi-Let-7 Mml-Let-7-P2a1 Mmr-Let-7-P2a1 Mmu-Let-7-P2a1 Mom-Let-7 Mun-Let-7-P2a1 Npo-Let-7 Oan-Let-7-P2a1 Obi-Let-7 Ocu-Let-7-P2a1 Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P2a1 Pau-Let-7 Pbv-Let-7-P2a1 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P2a1 Rph-Let-7 Sha-Let-7-P2a1 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P2a1 Spu-Let-7 Sro-Let-7 Sto-Let-7-P2a1 Tca-Let-7 Tgu-Let-7-P2a1 Tur-Let-7 War-Let-7 Xbo-Let-7 Xla-Let-7-P2a1c Xla-Let-7-P2a1d Xtr-Let-7-P2a1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037335.1: 85450402-85450473 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Let-7-P2a1)

Let-7-P2a1 NC_037335.1: 85450402-85450473 [+] UCSC Ensembl
Let-7-P2b1 NC_037335.1: 85450756-85450832 [+] UCSC Ensembl
Let-7-P2c1 NC_037335.1: 85452964-85453038 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUCUCCCUGGACAUUCUCUUCACUGUGGGAUGAGGUAGUAGGUUGUAUAGUUUUAGGGUCACACCCACCACUGGGAGAUAACUAUACAAUCUACUGUCUUUCCUAAGGUGAUAGAAAAAUCUGCAUCCAAAC

Get precursor sequence

Structure

        10          20        30        40        50        60      
UUCUCCCUGGACAUUCU-  -|    G     U   GU                UUAGGGUCACACC 
                  CU UCACU UGGGA GAG  AGUAGGUUGUAUAGUU             \
                  GA AGUGG AUCCU UUC  UCAUCUAACAUAUCAA             C
CAAACCUACGUCUAAAAA  U^    A     -   UG                UAGAGGGUCACCA 
130       120       110        100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Let-7-P2a1_5p

mirBase accession

MIMAT0003844

Sequence

0- UGAGGUAGUAGGUUGUAUAGUU -22

Get sequence

Proposed targets

TargetScanVert: bta-let-7a-5p

Star sequence

Bta-Let-7-P2a1_3p*

mirBase accession

None

Sequence

51- CUAUACAAUCUACUGUCUUUC -72

Get sequence