Let-7-P2a1

MirGeneDB ID

Gga-Let-7-P2a1

Family name

LET-7 (all species)

Seed

GAGGUAG

Species

Chicken (Gallus gallus)

MiRBase ID

gga-let-7a-1

Paralogues

Gga-Let-7-P1c Gga-Let-7-P1d Gga-Let-7-P2a2 Gga-Let-7-P2a4 Gga-Let-7-P2b1 Gga-Let-7-P2b2 Gga-Let-7-P2b4 Gga-Let-7-P2c1 Gga-Let-7-P2c2 Gga-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P2a1 Aga-Let-7 Agr-Let-7 Ami-Let-7-P2a1 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P2a1 Cfa-Let-7-P2a1 Cja-Let-7-P2a1 Cli-Let-7-P2a1 Cmi-Let-7-P2a1 Cpi-Let-7-P2a1 Cpo-Let-7-P2a1 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P2a1 Dpu-Let-7 Dre-Let-7-P2a1a Dsi-Let-7 Dya-Let-7 Eba-Let-7 Eca-Let-7-P2a1 Egr-Let-7 Esc-Let-7 Ete-Let-7-P2a1 Gja-Let-7-P2a1 Gmo-Let-7-P2a1a Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P2a1 Isc-Let-7 Laf-Let-7-P2a1 Lan-Let-7 Lch-Let-7-P2a1 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P2a1 Mal-Let-7-P2a1a Mdo-Let-7-P2a1 Mgi-Let-7 Mml-Let-7-P2a1 Mmr-Let-7-P2a1 Mmu-Let-7-P2a1 Mom-Let-7 Mun-Let-7-P2a1 Npo-Let-7 Oan-Let-7-P2a1 Obi-Let-7 Ocu-Let-7-P2a1 Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P2a1 Pau-Let-7 Pbv-Let-7-P2a1 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P2a1 Rph-Let-7 Sha-Let-7-P2a1 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P2a1 Spu-Let-7 Sro-Let-7 Sto-Let-7-P2a1 Tca-Let-7 Tgu-Let-7-P2a1 Tur-Let-7 War-Let-7 Xbo-Let-7 Xla-Let-7-P2a1c Xla-Let-7-P2a1d Xtr-Let-7-P2a1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

12: 6490211-6490282 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Let-7-P2a1)

Let-7-P2c1 12: 6488759-6488833 [-] UCSC Ensembl
Let-7-P2b1 12: 6489795-6489871 [-] UCSC Ensembl
Let-7-P2a1 12: 6490211-6490282 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUCACCUCUGAAGAUGCCUGCACUGUGGGAUGAGGUAGUAGGUUGUAUAGUUUUAGGGUCAUACCCGCAACUGGGAGAUAACUAUACAAUCUACUGUCUUUCCUAAAGCAGCAGAAAAUCAACAACGGAGAC

Get precursor sequence

Structure

        10         20         30        40        50        60      
AUCACCUCUGAAGAUGC-    A-| G     U   GU                UUAGGGUCAUACC 
                  CUGC  CU UGGGA GAG  AGUAGGUUGUAUAGUU             \
                  GACG  GA AUCCU UUC  UCAUCUAACAUAUCAA             C
CAGAGGCAACAACUAAAA    AC^ A     -   UG                UAGAGGGUCAACG 
130       120       110        100        90        80        70

Deep sequencing

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3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Let-7-P2a1_5p

mirBase accession

MIMAT0001101

Sequence

0- UGAGGUAGUAGGUUGUAUAGUU -22

Get sequence

Proposed targets

TargetScanVert: gga-let-7a-5p
miRDB: MIMAT0001101

Star sequence

Gga-Let-7-P2a1_3p*

mirBase accession

None

Sequence

51- CUAUACAAUCUACUGUCUUUC -72

Get sequence