MirGeneDB 3.0
MirGeneDB ID

Gga-Let-7-P2b4

Family name LET-7 (all species)
Seed GAGGUAG
Species Chicken (Gallus gallus)
MiRBase ID gga-let-7j
Paralogues Gga-Let-7-P1c  Gga-Let-7-P1d  Gga-Let-7-P2a1  Gga-Let-7-P2a2  Gga-Let-7-P2a4  Gga-Let-7-P2b1  Gga-Let-7-P2b2  Gga-Let-7-P2c1  Gga-Let-7-P2c2  Gga-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2b4  Aga-Let-7  Agr-Let-7  Ami-Let-7-P2b4  Bge-Let-7  Bko-Let-7  Bpl-Let-7  Cli-Let-7-P2b4  Cmi-Let-7-P2b4  Cpi-Let-7-P2b4  Cte-Let-7  Dan-Let-7  Dlo-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dpu-Let-7  Dre-Let-7-P2b4a  Dre-Let-7-P2b4b  Dsi-Let-7  Dya-Let-7  Eba-Let-7  Egr-Let-7  Esc-Let-7  Gja-Let-7-P2b4  Gmo-Let-7-P2b4a  Gmo-Let-7-P2b4b  Gpa-Let-7  Gsa-Let-7  Gsp-Let-7  Hme-Let-7  Hmi-Let-7  Hru-Let-7  Isc-Let-7  Lan-Let-7  Lch-Let-7-P2b4  Lgi-Let-7  Lhy-Let-7  Llo-Let-7  Loc-Let-7-P2b4  Mal-Let-7-P2b4a  Mal-Let-7-P2b4b  Mgi-Let-7  Mom-Let-7  Mun-Let-7-P2b4  Npo-Let-7  Oan-Let-7-P2b4  Obi-Let-7  Ofu-Let-7  Ovu-Let-7  Pau-Let-7  Pbv-Let-7-P2b4  Pca-Let-7  Pcr-Let-7  Pdu-Let-7  Pfl-Let-7  Ple-Let-7  Pmi-Let-7  Pve-Let-7  Rph-Let-7  Sko-Let-7  Sma-Let-7  Sne-Let-7  Snu-Let-7  Spt-Let-7-P2b4  Spu-Let-7  Sro-Let-7  Tca-Let-7  Tgu-Let-7-P2b4  Tni-Let-7-P2b4a  Tni-Let-7-P2b4b  Tur-Let-7  War-Let-7  Xbo-Let-7 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(Gallus_gallus.GRCg6a)		 26: 1650720-1650797 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P2b4)		 Let-7-P2b4 26: 1650720-1650797 [-] UCSC Ensembl
Let-7-P2a4 26: 1650925-1650995 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACACCAGACCUCUGUACUGCUCUGUGGAGGUGAGGUAGUAGGUUGUAUAGUUUGGUGGGAGGGAUUCUGUCCCAUUUCAGGUGAUAACUAUACAGUCUAUUGCCUUCCUUAAAGAGCAGCAAUACCACCGGAGGAGAU
Get precursor sequence
Structure
        10           20        30        40        50        60         
ACACCAGACCUCUGUAC---|     GUG    U          GU         UGGUGGGAGGGAUUCU 
                    UGCUCU   GAGG GAGGUAGUAG  UGUAUAGUU                \
                    ACGAGA   UUCC UUCCGUUAUC  ACAUAUCAA                G
UAGAGGAGGCCACCAUAACG^     AA-    -          UG         UAGUGGACUUUACCCU 
      130       120        110        100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Let-7-P2b4_5p
mirBase accessionMIMAT0001181
Sequence 
0- UGAGGUAGUAGGUUGUAUAGUU -22
Get sequence
Proposed targets TargetScanVert: gga-let-7j-5p
miRDB: MIMAT0001181
Star sequence

Gga-Let-7-P2b4_3p*
mirBase accessionMIMAT0026542
Sequence 
57- CUAUACAGUCUAUUGCCUUCC -78
Get sequence
Proposed targets TargetScanVert: gga-let-7j-3p
miRDB: MIMAT0026542