MirGeneDB 2.1

MirGeneDB ID

Gja-Let-7-P2b4

Family name LET-7 (all species)
Seed GAGGUAG
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Let-7-P1b  Gja-Let-7-P1c  Gja-Let-7-P1d  Gja-Let-7-P2a1  Gja-Let-7-P2a2  Gja-Let-7-P2a3  Gja-Let-7-P2a4  Gja-Let-7-P2b1  Gja-Let-7-P2b2  Gja-Let-7-P2b3  Gja-Let-7-P2c1  Gja-Let-7-P2c2  Gja-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2b4  Ami-Let-7-P2b4  Bge-Let-7  Bpl-Let-7  Cgi-Let-7  Cli-Let-7-P2b4  Cmi-Let-7-P2b4  Cpi-Let-7-P2b4  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dpu-Let-7  Dre-Let-7-P2b4a  Dre-Let-7-P2b4b  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Gga-Let-7-P2b4  Gmo-Let-7-P2b4a  Gmo-Let-7-P2b4b  Hme-Let-7  Isc-Let-7  Lan-Let-7  Lch-Let-7-P2b4  Lgi-Let-7  Loc-Let-7-P2b4  Mal-Let-7-P2b4a  Mal-Let-7-P2b4b  Mun-Let-7-P2b4  Npo-Let-7  Oan-Let-7-P2b4  Obi-Let-7  Ovu-Let-7  Pbv-Let-7-P2b4  Pfl-Let-7  Pmi-Let-7  Sko-Let-7  Spt-Let-7-P2b4  Spu-Let-7  Tca-Let-7  Tgu-Let-7-P2b4  Tni-Let-7-P2b4a  Tni-Let-7-P2b4b  Xbo-Let-7 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_001447785.1_Gekko_japonicus)
NW_015171521.1: 414499-414575 [-]
Precursor
(pre-Mir +30nt flank)
AUGGAAUGCUUCUGUUCUGCUCCGUGGAGGUGAGGUAGUAGGUUGUAUAGUUUGUGGGAGGGGUGUCAUCCCAUUUCAGGUGAUAACUAUACAGUCUAUUGCCUUCCUUGAGGAGCAGCAAAGCUCCCUCUGAACAU
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Structure
        10           20        30        40        50        60        
AUGGAAUGCUUCUGUUC---|     GUG    U          GU         UGUGGGAGGGGUGUC 
                    UGCUCC   GAGG GAGGUAGUAG  UGUAUAGUU               A
                    ACGAGG   UUCC UUCCGUUAUC  ACAUAUCAA               U
UACAAGUCUCCCUCGAAACG^     AG-    -          UG         UAGUGGACUUUACCC 
     130       120       110         100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Mature sequence

Gja-Let-7-P2b4_5p

mirBase accessionNone
Sequence
0- UGAGGUAGUAGGUUGUAUAGUU -22
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Star sequence

Gja-Let-7-P2b4_3p*

mirBase accessionNone
Sequence
56- CUAUACAGUCUAUUGCCUUCC -77
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