MirGeneDB ID | Aca-Let-7-P2b4 |
Family name |
LET-7 (all species) |
Seed |
GAGGUAG |
Species |
Green anole lizard (Anolis carolinensis) |
MiRBase ID |
|
Paralogues |
Aca-Let-7-P1b
Aca-Let-7-P1c
Aca-Let-7-P1d
Aca-Let-7-P2a1
Aca-Let-7-P2a2
Aca-Let-7-P2a3
Aca-Let-7-P2a4
Aca-Let-7-P2b1
Aca-Let-7-P2b2
Aca-Let-7-P2b3
Aca-Let-7-P2c1
Aca-Let-7-P2c2
Aca-Let-7-P2c3
|
Orthologues |
Aae-Let-7
Aga-Let-7
Agr-Let-7
Ami-Let-7-P2b4
Bge-Let-7
Bko-Let-7
Bpl-Let-7
Cli-Let-7-P2b4
Cmi-Let-7-P2b4
Cpi-Let-7-P2b4
Cte-Let-7
Dan-Let-7
Dlo-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dpu-Let-7
Dre-Let-7-P2b4a
Dre-Let-7-P2b4b
Dsi-Let-7
Dya-Let-7
Eba-Let-7
Egr-Let-7
Esc-Let-7
Gga-Let-7-P2b4
Gja-Let-7-P2b4
Gmo-Let-7-P2b4a
Gmo-Let-7-P2b4b
Gpa-Let-7
Gsa-Let-7
Gsp-Let-7
Hme-Let-7
Hmi-Let-7
Hru-Let-7
Isc-Let-7
Lan-Let-7
Lch-Let-7-P2b4
Lgi-Let-7
Lhy-Let-7
Llo-Let-7
Loc-Let-7-P2b4
Mal-Let-7-P2b4a
Mal-Let-7-P2b4b
Mgi-Let-7
Mom-Let-7
Mun-Let-7-P2b4
Npo-Let-7
Oan-Let-7-P2b4
Obi-Let-7
Ofu-Let-7
Ovu-Let-7
Pau-Let-7
Pbv-Let-7-P2b4
Pca-Let-7
Pcr-Let-7
Pdu-Let-7
Pfl-Let-7
Ple-Let-7
Pmi-Let-7
Pve-Let-7
Rph-Let-7
Sko-Let-7
Sma-Let-7
Sne-Let-7
Snu-Let-7
Spt-Let-7-P2b4
Spu-Let-7
Sro-Let-7
Tca-Let-7
Tgu-Let-7-P2b4
Tni-Let-7-P2b4a
Tni-Let-7-P2b4b
Tur-Let-7
War-Let-7
Xbo-Let-7
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (anoCar2) |
4: 123683315-123683391 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUAUGAAGCCUCUAUCUUGCUUUGUGGAGGUGAGGUAGUAGGUUGUAUAGUUUGUGGGAGGGAUUACAUCCCAUUUCAGGUGAUAACUAUACAGUCUAUUGCCUUCCUUAAGGAGCAACAAAUCUGGCUUAGGAGCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AUAUGAAGCCUCUAUCU---| GUG U GU UGUGGGAGGGAUUAC
UGCUUU GAGG GAGGUAGUAG UGUAUAGUU A
ACGAGG UUCC UUCCGUUAUC ACAUAUCAA U
ACGAGGAUUCGGUCUAAACA^ AA- - UG UAGUGGACUUUACCC
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | Although all Let-7-P13s have a templated "T" all other vertebrate Let-7-P4 through P14s are Group 2 miRNAs and where studied all 3' terminal "U"s are post-transcriptionally added to the transcript and thus P13 is also considered a Group 2 miRNA. |
3' NTU |
Yes
|
Motifs | UGUG in loop |
Tissue expression
|
|
Mature sequence |
Aca-Let-7-P2b4_5p |
mirBase accession | None |
Sequence |
0- UGAGGUAGUAGGUUGUAUAGUU -22
Get sequence
|
Star sequence |
Aca-Let-7-P2b4_3p* |
mirBase accession | None |
Sequence |
56- CUAUACAGUCUAUUGCCUUCC -77
Get sequence
|