MirGeneDB 3.0
MirGeneDB ID

Lch-Let-7-P2b4

Family name LET-7 (all species)
Seed GAGGUAG
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Let-7-P1b  Lch-Let-7-P1c  Lch-Let-7-P1d  Lch-Let-7-P2a1  Lch-Let-7-P2a2  Lch-Let-7-P2a3  Lch-Let-7-P2a4  Lch-Let-7-P2b1  Lch-Let-7-P2b2  Lch-Let-7-P2c1  Lch-Let-7-P2c2  Lch-Let-7-P2c3  Lch-Let-7-P2c4 
Orthologues Aae-Let-7  Aca-Let-7-P2b4  Aga-Let-7  Agr-Let-7  Ami-Let-7-P2b4  Bge-Let-7  Bko-Let-7  Bpl-Let-7  Cli-Let-7-P2b4  Cmi-Let-7-P2b4  Cpi-Let-7-P2b4  Cte-Let-7  Dan-Let-7  Dlo-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dpu-Let-7  Dre-Let-7-P2b4a  Dre-Let-7-P2b4b  Dsi-Let-7  Dya-Let-7  Eba-Let-7  Egr-Let-7  Esc-Let-7  Gga-Let-7-P2b4  Gja-Let-7-P2b4  Gmo-Let-7-P2b4a  Gmo-Let-7-P2b4b  Gpa-Let-7  Gsa-Let-7  Gsp-Let-7  Hme-Let-7  Hmi-Let-7  Hru-Let-7  Isc-Let-7  Lan-Let-7  Lgi-Let-7  Lhy-Let-7  Llo-Let-7  Loc-Let-7-P2b4  Mal-Let-7-P2b4a  Mal-Let-7-P2b4b  Mgi-Let-7  Mom-Let-7  Mun-Let-7-P2b4  Npo-Let-7  Oan-Let-7-P2b4  Obi-Let-7  Ofu-Let-7  Ovu-Let-7  Pau-Let-7  Pbv-Let-7-P2b4  Pca-Let-7  Pcr-Let-7  Pdu-Let-7  Pfl-Let-7  Ple-Let-7  Pmi-Let-7  Pve-Let-7  Rph-Let-7  Sko-Let-7  Sma-Let-7  Sne-Let-7  Snu-Let-7  Spt-Let-7-P2b4  Spu-Let-7  Sro-Let-7  Tca-Let-7  Tgu-Let-7-P2b4  Tni-Let-7-P2b4a  Tni-Let-7-P2b4b  Tur-Let-7  War-Let-7  Xbo-Let-7 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LatCha1_add)		 JH126819.1: 500448-500525 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUGGACCCAGGCAGCGCUGCUGCAUGGAGGUGAGGUAGUAGGUUGUAUAGUUUAGUGGACAGGGUUUCGUUCAGUUCCAGAUGAUAACUAUACAGUCUAUUGCCUUCCUUAAUGAGCAGAGAGUCAUCGAGGAGACAC
Get precursor sequence
Structure
        10           20        30        40        50        60         
GUGGACCCAGGCAGCGC---|   G   G    U          GU         UAGUGGACAGGGUUUC 
                    UGCU CAU GAGG GAGGUAGUAG  UGUAUAGUU                \
                    ACGA GUA UUCC UUCCGUUAUC  ACAUAUCAA                G
CACAGAGGAGCUACUGAGAG^   -   A    -          UG         UAGUAGACCUUGACUU 
      130       120        110        100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Lch-Let-7-P2b4_5p (predicted)
mirBase accessionNone
Sequence 
0- UGAGGUAGUAGGUUGUAUAGUU -22
Get sequence
Star sequence

Lch-Let-7-P2b4_3p* (predicted)
mirBase accessionNone
Sequence 
57- CUAUACAGUCUAUUGCCUUCC -78
Get sequence