MirGeneDB ID | Lch-Let-7-P2a4 |
---|---|
Family name | LET-7 (all species) |
Seed | GAGGUAG |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Let-7-P1b Lch-Let-7-P1c Lch-Let-7-P1d Lch-Let-7-P2a1 Lch-Let-7-P2a2 Lch-Let-7-P2a3 Lch-Let-7-P2b1 Lch-Let-7-P2b2 Lch-Let-7-P2b4 Lch-Let-7-P2c1 Lch-Let-7-P2c2 Lch-Let-7-P2c3 Lch-Let-7-P2c4 |
Orthologues | Aae-Let-7 Aca-Let-7-P2a4 Ami-Let-7-P2a4 Bge-Let-7 Bpl-Let-7 Cgi-Let-7 Cli-Let-7-P2a4 Cmi-Let-7-P2a4 Cpi-Let-7-P2a4 Cte-Let-7 Dan-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dpu-Let-7 Dre-Let-7-P2a4a Dre-Let-7-P2a4b Dsi-Let-7 Dya-Let-7 Esc-Let-7 Gga-Let-7-P2a4 Gja-Let-7-P2a4 Gmo-Let-7-P2a4a Gmo-Let-7-P2a4b Hme-Let-7 Isc-Let-7 Lan-Let-7 Lgi-Let-7 Loc-Let-7-P2a4 Mal-Let-7-P2a4a Mal-Let-7-P2a4b Mun-Let-7-P2a4 Npo-Let-7 Oan-Let-7-P2a4 Obi-Let-7 Ovu-Let-7 Pbv-Let-7-P2a4 Pfl-Let-7 Pmi-Let-7 Sko-Let-7 Spt-Let-7-P2a4 Spu-Let-7 Tca-Let-7 Tgu-Let-7-P2a4 Tni-Let-7-P2a4a Tni-Let-7-P2a4b Xbo-Let-7 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Bilateria |
Genome context (LatCha1_add) |
JH126819.1: 499283-499354 [+] Ensembl |
Precursor (pre-Mir +30nt flank) | ACUGCUGUUGGUGAUCACUGUACCUGGGGCUGAGGUAGUAGAUUGAAUAGUUGUGAGGCUCCUGCUCUCCCUUUGAGAUAACUAUACAAUCUACUGUCUUUCCAAAGGAGACAGAUUUUUCCUCACUGAAGAGet precursor sequence |
Structure | 10 20 30 40 50 60 ACUGCUGUUGGUGAUCA- A-| GG CU GU A GUGAGGCUCCUGC CUGU CCU GG GAG AGUAGAUUG AUAGUU \ GACA GGA CC UUC UCAUCUAAC UAUCAA U AGAAGUCACUCCUUUUUA GA^ AA U- UG A UAGAGUUUCCCUC 130 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UGUG in loop |
Mature sequence | Lch-Let-7-P2a4_5p (predicted) |
mirBase accession | None |
Sequence |
0- UGAGGUAGUAGAUUGAAUAGUU -22
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|
Star sequence | Lch-Let-7-P2a4_3p* (predicted) |
mirBase accession | None |
Sequence |
51- CUAUACAAUCUACUGUCUUUC -72
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|