MirGeneDB ID | Lch-Let-7-P2c1 |
---|---|
Family name | LET-7 (all species) |
Seed | GAGGUAG |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Let-7-P1b Lch-Let-7-P1c Lch-Let-7-P1d Lch-Let-7-P2a1 Lch-Let-7-P2a2 Lch-Let-7-P2a3 Lch-Let-7-P2a4 Lch-Let-7-P2b1 Lch-Let-7-P2b2 Lch-Let-7-P2b4 Lch-Let-7-P2c2 Lch-Let-7-P2c3 Lch-Let-7-P2c4 |
Orthologues | Aae-Let-7 Aca-Let-7-P2c1 Ami-Let-7-P2c1 Bge-Let-7 Bpl-Let-7 Bta-Let-7-P2c1 Cfa-Let-7-P2c1 Cgi-Let-7 Cli-Let-7-P2c1 Cmi-Let-7-P2c1 Cpi-Let-7-P2c1 Cpo-Let-7-P2c1 Cte-Let-7 Dan-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P2c1 Dpu-Let-7 Dsi-Let-7 Dya-Let-7 Esc-Let-7 Ete-Let-7-P2c1 Gga-Let-7-P2c1 Gja-Let-7-P2c1 Hme-Let-7 Hsa-Let-7-P2c1 Isc-Let-7 Lan-Let-7 Lgi-Let-7 Loc-Let-7-P2c1 Mdo-Let-7-P2c1 Mml-Let-7-P2c1 Mmu-Let-7-P2c1 Mun-Let-7-P2c1 Npo-Let-7 Oan-Let-7-P2c1 Obi-Let-7 Ocu-Let-7-P2c1 Ovu-Let-7 Pbv-Let-7-P2c1 Pfl-Let-7 Pmi-Let-7 Rno-Let-7-P2c1 Sha-Let-7-P2c1 Sko-Let-7 Spt-Let-7-P2c1 Spu-Let-7 Sto-Let-7-P2c1 Tca-Let-7 Tgu-Let-7-P2c1 Xbo-Let-7 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Bilateria |
Genome context (LatCha1_add) |
JH129429.1: 115267-115341 [+] Ensembl |
Precursor (pre-Mir +30nt flank) | AACUGCUGAUGAACCAGUGGGCUCCUGGGUAGAGGUAGUAGGUUGCAUAGUUUUAGGGCAGGGAUUUUGCUCAGAAGGAGGUAACUAUACAACCUGCUGCCUUUCUUAGGGCUUCAUACUCACGACUUGAUUUCUGet precursor sequence |
Structure | 10 20 30 40 50 60 AACUGCUGAUGAACCAGU---| U U C UUAGGGCAGGGAUU GGGC CCUGGG AGAGGUAGUAGGUUG AUAGUU U UUCG GGAUUC UUUCCGUCGUCCAAC UAUCAA U UCUUUAGUUCAGCACUCAUAC^ - - A UGGAGGAAGACUCG 130 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Mature sequence | Lch-Let-7-P2c1_5p (predicted) |
mirBase accession | None |
Sequence |
0- AGAGGUAGUAGGUUGCAUAGUU -22
Get sequence
|
Star sequence | Lch-Let-7-P2c1_3p* (predicted) |
mirBase accession | None |
Sequence |
54- CUAUACAACCUGCUGCCUUUC -75
Get sequence
|