MirGeneDB ID | Neu-Let-7-P2c1 |
Family name |
LET-7 (all species) |
Seed |
GAGGUAG |
Species |
Tammar Wallaby (Notamacropus eugenii) |
MiRBase ID |
|
Paralogues |
Neu-Let-7-P1c
Neu-Let-7-P1d
Neu-Let-7-P2a2
Neu-Let-7-P2a3
Neu-Let-7-P2b1
Neu-Let-7-P2b2
Neu-Let-7-P2c2
|
Orthologues |
Aae-Let-7
Aca-Let-7-P2c1
Aga-Let-7
Agr-Let-7
Ami-Let-7-P2c1
Bge-Let-7
Bko-Let-7
Bpl-Let-7
Bta-Let-7-P2c1
Cfa-Let-7-P2c1
Cja-Let-7-P2c1
Cli-Let-7-P2c1
Cmi-Let-7-P2c1
Cpi-Let-7-P2c1
Cpo-Let-7-P2c1
Cte-Let-7
Dan-Let-7
Dlo-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dno-Let-7-P2c1
Dpu-Let-7
Dsi-Let-7
Dya-Let-7
Eba-Let-7
Eca-Let-7-P2c1
Egr-Let-7
Esc-Let-7
Ete-Let-7-P2c1
Gga-Let-7-P2c1
Gja-Let-7-P2c1
Gpa-Let-7
Gsa-Let-7
Gsp-Let-7
Hme-Let-7
Hmi-Let-7
Hru-Let-7
Hsa-Let-7-P2c1
Isc-Let-7
Laf-Let-7-P2c1
Lan-Let-7
Lch-Let-7-P2c1
Lgi-Let-7
Lhy-Let-7
Llo-Let-7
Loc-Let-7-P2c1
Mdo-Let-7-P2c1
Mgi-Let-7
Mml-Let-7-P2c1
Mmr-Let-7-P2c1
Mmu-Let-7-P2c1
Mom-Let-7
Mun-Let-7-P2c1
Npo-Let-7
Oan-Let-7-P2c1
Obi-Let-7
Ocu-Let-7-P2c1
Ofu-Let-7
Ovu-Let-7
Pab-Let-7-P2c1
Pau-Let-7
Pbv-Let-7-P2c1
Pca-Let-7
Pcr-Let-7
Pdu-Let-7
Pfl-Let-7
Ple-Let-7
Pmi-Let-7
Pve-Let-7
Rno-Let-7-P2c1
Rph-Let-7
Sha-Let-7-P2c1
Sko-Let-7
Sma-Let-7
Sne-Let-7
Snu-Let-7
Spt-Let-7-P2c1
Spu-Let-7
Sro-Let-7
Sto-Let-7-P2c1
Tca-Let-7
Tgu-Let-7-P2c1
Tur-Let-7
War-Let-7
Xbo-Let-7
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_028372415.1_mMacEug1.pri) |
CM051815.1: 423136654-423136728 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AACUGCAGAAGAAUGAAUGGGCUCCUAGGAAGAGGUAGUAGGUUGCAUAGUUUUAGGGCAGGGAUUUUGCCCACAAGGAGUUAACUAUACAACCUGCUGCCUUUCUUAGGGCUCUAUUAUUACAACGGAACCUCU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AACUGCAGAAGAAUGAAU---| U A C UUAGGGCAGGGAUU
GGGC CCUAGGA GAGGUAGUAGGUUG AUAGUU U
CUCG GGAUUCU UUCCGUCGUCCAAC UAUCAA U
UCUCCAAGGCAACAUUAUUAU^ - - A UUGAGGAACACCCG
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | This is a Group 2 in human according to Kim et al. (2017) but because there is a templated 3' U it is not possible according to read data to classify it as such in other taxa although the secondary structure is consistent with this categorization. |
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Br |
Ce |
Fi |
Li |
Mi |
Mi |
Mi |
Mi |
Mi |
Ov |
Se |
Se |
Te |
Te |
Te |
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Mature sequence |
Neu-Let-7-P2c1_5p |
mirBase accession | None |
Sequence |
0- AGAGGUAGUAGGUUGCAUAGUU -22
Get sequence
|
Star sequence |
Neu-Let-7-P2c1_3p* |
mirBase accession | None |
Sequence |
54- CUAUACAACCUGCUGCCUUUC -75
Get sequence
|