MirGeneDB 3.0
MirGeneDB ID

Loc-Let-7-P2c1

Family name LET-7 (all species)
Seed GAAGUAG
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Let-7-P1b  Loc-Let-7-P1c  Loc-Let-7-P1d  Loc-Let-7-P2a1  Loc-Let-7-P2a2  Loc-Let-7-P2a3  Loc-Let-7-P2a4  Loc-Let-7-P2b1  Loc-Let-7-P2b2  Loc-Let-7-P2b3  Loc-Let-7-P2b4  Loc-Let-7-P2c2  Loc-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2c1  Aga-Let-7  Agr-Let-7  Ami-Let-7-P2c1  Bge-Let-7  Bko-Let-7  Bpl-Let-7  Bta-Let-7-P2c1  Cfa-Let-7-P2c1  Cja-Let-7-P2c1  Cli-Let-7-P2c1  Cmi-Let-7-P2c1  Cpi-Let-7-P2c1  Cpo-Let-7-P2c1  Cte-Let-7  Dan-Let-7  Dlo-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2c1  Dpu-Let-7  Dsi-Let-7  Dya-Let-7  Eba-Let-7  Eca-Let-7-P2c1  Egr-Let-7  Esc-Let-7  Ete-Let-7-P2c1  Gga-Let-7-P2c1  Gja-Let-7-P2c1  Gpa-Let-7  Gsa-Let-7  Gsp-Let-7  Hme-Let-7  Hmi-Let-7  Hru-Let-7  Hsa-Let-7-P2c1  Isc-Let-7  Laf-Let-7-P2c1  Lan-Let-7  Lch-Let-7-P2c1  Lgi-Let-7  Lhy-Let-7  Llo-Let-7  Mdo-Let-7-P2c1  Mgi-Let-7  Mml-Let-7-P2c1  Mmr-Let-7-P2c1  Mmu-Let-7-P2c1  Mom-Let-7  Mun-Let-7-P2c1  Neu-Let-7-P2c1  Npo-Let-7  Oan-Let-7-P2c1  Obi-Let-7  Ocu-Let-7-P2c1  Ofu-Let-7  Ovu-Let-7  Pab-Let-7-P2c1  Pau-Let-7  Pbv-Let-7-P2c1  Pca-Let-7  Pcr-Let-7  Pdu-Let-7  Pfl-Let-7  Ple-Let-7  Pmi-Let-7  Pve-Let-7  Rno-Let-7-P2c1  Rph-Let-7  Sha-Let-7-P2c1  Sko-Let-7  Sma-Let-7  Sne-Let-7  Snu-Let-7  Spt-Let-7-P2c1  Spu-Let-7  Sro-Let-7  Sto-Let-7-P2c1  Tca-Let-7  Tgu-Let-7-P2c1  Tur-Let-7  War-Let-7  Xbo-Let-7 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LepOcu1)		 LG5: 47689931-47690005 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GAAAGUGAGAGGAAAGCUGGGCUCUUAGGUAGAAGUAGCAGGUUCCAUAGUUGUAGGGCAGCAAUCUUAUCCCACAGGAGGUAACUAUACAACCUGUUGCCUUUCUUAGUGCUACACGGUUACAGCUAUCUAAUU
Get precursor sequence
Structure
        10           20        30        40        50        60       
GAAAGUGAGAGGAAAGCUG---|  U  U   U   A          CC      GUAGGGCAGCAAUC 
                      GGC CU AGG AGA GUAGCAGGUU  AUAGUU              U
                      UCG GA UUC UUU CGUUGUCCAA  UAUCAA              U
UUAAUCUAUCGACAUUGGCACA^  U  -   -   C          CA      UGGAGGACACCCUA 
   130       120       110         100        90        80        70
Deep sequencing
CommentThis might be an example of a recently lost miRNA gene as there are mutations in the seed and no reads detected in the small RNA library but possesses a canonical secondary structure.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Let-7-P2c1_5p (predicted)
mirBase accessionNone
Sequence 
0- AGAAGUAGCAGGUUCCAUAGUU -22
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Star sequence

Loc-Let-7-P2c1_3p* (predicted)
mirBase accessionNone
Sequence 
54- CUAUACAACCUGUUGCCUUUC -75
Get sequence