| MirGeneDB ID | Cmi-Let-7-P2c1 |
|---|
| Family name |
LET-7 (all species) |
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| Seed |
GAGGUAG |
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| Species |
Australian ghostshark (Callorhinchus milii) |
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| MiRBase ID |
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| Paralogues |
Cmi-Let-7-P1d
Cmi-Let-7-P2a1
Cmi-Let-7-P2a2
Cmi-Let-7-P2a4
Cmi-Let-7-P2b2
Cmi-Let-7-P2b4
Cmi-Let-7-P2c2
Cmi-Let-7-P2c3
Cmi-Let-7-P2c4
|
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| Orthologues |
Aae-Let-7
Aca-Let-7-P2c1
Ami-Let-7-P2c1
Bge-Let-7
Bpl-Let-7
Bta-Let-7-P2c1
Cfa-Let-7-P2c1
Cgi-Let-7
Cli-Let-7-P2c1
Cpi-Let-7-P2c1
Cpo-Let-7-P2c1
Cte-Let-7
Dan-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dno-Let-7-P2c1
Dpu-Let-7
Dsi-Let-7
Dya-Let-7
Esc-Let-7
Ete-Let-7-P2c1
Gga-Let-7-P2c1
Gja-Let-7-P2c1
Hme-Let-7
Hsa-Let-7-P2c1
Isc-Let-7
Lan-Let-7
Lch-Let-7-P2c1
Lgi-Let-7
Loc-Let-7-P2c1
Mdo-Let-7-P2c1
Mml-Let-7-P2c1
Mmu-Let-7-P2c1
Mun-Let-7-P2c1
Npo-Let-7
Oan-Let-7-P2c1
Obi-Let-7
Ocu-Let-7-P2c1
Ovu-Let-7
Pbv-Let-7-P2c1
Pfl-Let-7
Pmi-Let-7
Rno-Let-7-P2c1
Sha-Let-7-P2c1
Sko-Let-7
Spt-Let-7-P2c1
Spu-Let-7
Sto-Let-7-P2c1
Tca-Let-7
Tgu-Let-7-P2c1
Xbo-Let-7
|
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| Node of Origin (locus) |
Gnathostomata
|
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| Node of Origin (family) |
Bilateria
|
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Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635961.1: 559323-559397 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GAGUUGGAUUAAUGUGGUGAGCUGCUGGGUAGAGGUAGUAGGUUGCAUAGUUUGAGGGCAGGGAUUUUGCCCCAAAGGAGAUAACUAUACAACCUGCUGCCUUUCCUGGGGUAUCACACUCGCGGCUGGGCUGGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GAGUUGGAUUAAUGUGG-- -| G UG U C UGAGGGCAGGGAUU
UGA GCU C GG AGAGGUAGUAGGUUG AUAGUU U
ACU UGG G CC UUUCCGUCGUCCAAC UAUCAA U
UGGUCGGGUCGGCGCUCAC A^ - GU - A UAGAGGAAACCCCG
130 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Bl |
Br |
Ey |
Gi |
Gl |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Sk |
Sp |
Te |
Ut |
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| Mature sequence |
Cmi-Let-7-P2c1_5p |
| mirBase accession | None |
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| Sequence |
0- AGAGGUAGUAGGUUGCAUAGUU -22
Get sequence
|
|---|
| Star sequence |
Cmi-Let-7-P2c1_3p* |
| mirBase accession | None |
|---|
| Sequence |
54- CUAUACAACCUGCUGCCUUUC -75
Get sequence
|
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