| MirGeneDB ID | Cmi-Let-7-P2a4 |
|---|
| Family name |
LET-7 (all species) |
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| Seed |
GAGGUAG |
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| Species |
Australian ghostshark (Callorhinchus milii) |
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| MiRBase ID |
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| Paralogues |
Cmi-Let-7-P1d
Cmi-Let-7-P2a1
Cmi-Let-7-P2a2
Cmi-Let-7-P2b2
Cmi-Let-7-P2b4
Cmi-Let-7-P2c1
Cmi-Let-7-P2c2
Cmi-Let-7-P2c3
Cmi-Let-7-P2c4
|
|---|
| Orthologues |
Aae-Let-7
Aca-Let-7-P2a4
Ami-Let-7-P2a4
Bge-Let-7
Bpl-Let-7
Cgi-Let-7
Cli-Let-7-P2a4
Cpi-Let-7-P2a4
Cte-Let-7
Dan-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dpu-Let-7
Dre-Let-7-P2a4a
Dre-Let-7-P2a4b
Dsi-Let-7
Dya-Let-7
Esc-Let-7
Gga-Let-7-P2a4
Gja-Let-7-P2a4
Gmo-Let-7-P2a4a
Gmo-Let-7-P2a4b
Hme-Let-7
Isc-Let-7
Lan-Let-7
Lch-Let-7-P2a4
Lgi-Let-7
Loc-Let-7-P2a4
Mal-Let-7-P2a4a
Mal-Let-7-P2a4b
Mun-Let-7-P2a4
Npo-Let-7
Oan-Let-7-P2a4
Obi-Let-7
Ovu-Let-7
Pbv-Let-7-P2a4
Pfl-Let-7
Pmi-Let-7
Sko-Let-7
Spt-Let-7-P2a4
Spu-Let-7
Tca-Let-7
Tgu-Let-7-P2a4
Tni-Let-7-P2a4a
Tni-Let-7-P2a4b
Xbo-Let-7
|
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| Node of Origin (locus) |
Gnathostomata
|
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| Node of Origin (family) |
Bilateria
|
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Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI636238.1: 143839-143909 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGAAGCUGGUGUCCCAGCUGUCCUUAGGGCUGAGGUAGUAGAUUGUAUAGUUGUGAGGUUGUACACCUCCUCUGAGAUAACUAUGCAAUCUACUGUCUUUCCUGAAGAGACAGAAAGAACUGGGGACGGGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UGAAGCUGGUGUCCCAG- -| A CU GU GUGAGGUUGUAC
CUGUC CUU GGG GAG AGUAGAUUGUAUAGUU A
GACAG GAA UCC UUC UCAUCUAACGUAUCAA C
AGGGCAGGGGUCAAGAAA A^ G U- UG UAGAGUCUCCUC
. 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
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| Motifs | UGUG in loop |
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Tissue expression
|
| Bl |
Br |
Ey |
Gi |
Gl |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Sk |
Sp |
Te |
Ut |
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| Mature sequence |
Cmi-Let-7-P2a4_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGAGGUAGUAGAUUGUAUAGUU -22
Get sequence
|
|---|
| Star sequence |
Cmi-Let-7-P2a4_3p* |
| mirBase accession | None |
|---|
| Sequence |
50- CUAUGCAAUCUACUGUCUUUC -71
Get sequence
|
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