Let-7-P2a4

MirGeneDB ID

Ami-Let-7-P2a4

Family name

LET-7 (all species)

Seed

GAGGUAG

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-let-7e

Paralogues

Ami-Let-7-P1b Ami-Let-7-P1c Ami-Let-7-P1d Ami-Let-7-P2a1 Ami-Let-7-P2a2 Ami-Let-7-P2a3 Ami-Let-7-P2b1 Ami-Let-7-P2b2 Ami-Let-7-P2b3 Ami-Let-7-P2b4 Ami-Let-7-P2c1 Ami-Let-7-P2c2 Ami-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P2a4 Aga-Let-7 Agr-Let-7 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Cli-Let-7-P2a4 Cmi-Let-7-P2a4 Cpi-Let-7-P2a4 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dpu-Let-7 Dre-Let-7-P2a4a Dre-Let-7-P2a4b Dsi-Let-7 Dya-Let-7 Eba-Let-7 Egr-Let-7 Esc-Let-7 Gga-Let-7-P2a4 Gja-Let-7-P2a4 Gmo-Let-7-P2a4a Gmo-Let-7-P2a4b Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Isc-Let-7 Lan-Let-7 Lch-Let-7-P2a4 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P2a4 Mal-Let-7-P2a4a Mal-Let-7-P2a4b Mgi-Let-7 Mom-Let-7 Mun-Let-7-P2a4 Npo-Let-7 Oan-Let-7-P2a4 Obi-Let-7 Ofu-Let-7 Ovu-Let-7 Pau-Let-7 Pbv-Let-7-P2a4 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rph-Let-7 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P2a4 Spu-Let-7 Sro-Let-7 Tca-Let-7 Tgu-Let-7-P2a4 Tni-Let-7-P2a4a Tni-Let-7-P2a4b Tur-Let-7 War-Let-7 Xbo-Let-7

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017711201.1: 755437-755507 [+] UCSC

Clustered miRNAs
(< 50kb from Let-7-P2a4)

Let-7-P2a4 NW_017711201.1: 755437-755507 [+] UCSC
Let-7-P2b4 NW_017711201.1: 755673-755750 [+] UCSC

Precursor
(pre-Mir +30nt flank)

GCUCUUGCGGCCCCACGCUGUCCUUGAGGCUGAGGUAGUAGAUUGAAUAGUUGUGGAGUCCUACCCUCCCUUUGAGCUAACUAUACAAUCUACUGUCUUUCCUAAGGAGACAGUCAGGUCAUCAGCUCUGG

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Structure

        10         20         30        40        50        60     
GCUCUUGCGGCCCCACG-     -|  G   CU   GU         A      GUGGAGUCCUAC 
                  CUGUC CUU AGG  GAG  AGUAGAUUG AUAGUU            C
                  GACAG GGA UCC  UUC  UCAUCUAAC UAUCAA            C
GGUCUCGACUACUGGACU     A^  A   U-   UG         A      UCGAGUUUCCCU 
 .       120       110       100         90        80        70

Deep sequencing

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3' NTU

Yes

Motifs

UGUG in loop

Tissue expression

To

Mature sequence

Ami-Let-7-P2a4_5p

mirBase accession

MIMAT0038010

Sequence

0- UGAGGUAGUAGAUUGAAUAGUU -22

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Star sequence

Ami-Let-7-P2a4_3p*

mirBase accession

MIMAT0038011

Sequence

50- CUAUACAAUCUACUGUCUUUC -71

Get sequence