Let-7-P1d

MirGeneDB ID

Ami-Let-7-P1d

Family name

LET-7 (all species)

Seed

GAGGUAG

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-let-7a-2

Paralogues

Ami-Let-7-P1b Ami-Let-7-P1c Ami-Let-7-P2a1 Ami-Let-7-P2a2 Ami-Let-7-P2a3 Ami-Let-7-P2a4 Ami-Let-7-P2b1 Ami-Let-7-P2b2 Ami-Let-7-P2b3 Ami-Let-7-P2b4 Ami-Let-7-P2c1 Ami-Let-7-P2c2 Ami-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P1d Aga-Let-7 Agr-Let-7 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P1d Cfa-Let-7-P1d Cin-Let-7-P1 Cja-Let-7-P1d Cli-Let-7-P1d Cmi-Let-7-P1d Cpi-Let-7-P1d Cpo-Let-7-P1d Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P1d Dpu-Let-7 Dre-Let-7-P1d1 Dre-Let-7-P1d2 Dsi-Let-7 Dya-Let-7 Eba-Let-7 Eca-Let-7-P1d Egr-Let-7 Esc-Let-7 Ete-Let-7-P1d Gga-Let-7-P1d Gja-Let-7-P1d Gmo-Let-7-P1d1 Gmo-Let-7-P1d2 Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P1d Isc-Let-7 Laf-Let-7-P1d Lan-Let-7 Lch-Let-7-P1d Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P1d Mal-Let-7-P1d1 Mal-Let-7-P1d2 Mdo-Let-7-P1d Mgi-Let-7 Mml-Let-7-P1d Mmr-Let-7-P1d Mmu-Let-7-P1d Mom-Let-7 Mun-Let-7-P1d Neu-Let-7-P1d Npo-Let-7 Oan-Let-7-P1d Obi-Let-7 Ocu-Let-7-P1d Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P1d Pau-Let-7 Pbv-Let-7-P1d Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P1d Rph-Let-7 Sha-Let-7-P1d Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P1d Spu-Let-7 Sro-Let-7 Sto-Let-7-P1d Tca-Let-7 Tgu-Let-7-P1d Tni-Let-7-P1d1 Tni-Let-7-P1d2 Tur-Let-7 War-Let-7 Xbo-Let-7

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017709809.1: 3936841-3936907 [+] UCSC

Clustered miRNAs
(< 50kb from Let-7-P1d)

Mir-10-P2d NW_017709809.1: 3923387-3923443 [+] UCSC
Let-7-P1d NW_017709809.1: 3936841-3936907 [+] UCSC
Mir-10-P3d NW_017709809.1: 3961408-3961469 [+] UCSC

Precursor
(pre-Mir +30nt flank)

UUCAGCAUUUUUGACUGCAUGCAUCCAGGUUGAGGUAGUAGGUUGUAUAGUUUAGAAUGACACCAAGGGAGAUAACUGUACAACCUCCUAGCUUUCCUUGGGUCUUGCACAAAACGGCGUGGUGACA

Get precursor sequence

Structure

        10        20           30        40        50        60   
UUCAGCAUUUUUGACUGCA    ---|     UU   G   U             UAGAAUGACA 
                   UGCA   UCCAGG  GAG UAG AGGUUGUAUAGUU          \
                   ACGU   GGGUUC  UUC AUC UCCAACAUGUCAA          C
ACAGUGGUGCGGCAAAAC-    UCU^     CU   G   C             UAGAGGGAAC 
     120       110        100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Ami-Let-7-P1d_5p

mirBase accession

MIMAT0037999

Sequence

0- UGAGGUAGUAGGUUGUAUAGUU -22

Get sequence

Star sequence

Ami-Let-7-P1d_3p*

mirBase accession

MIMAT0038001

Sequence

45- CUGUACAACCUCCUAGCUUUCC -67

Get sequence