Let-7-P1d

MirGeneDB ID

Cli-Let-7-P1d

Family name

LET-7 (all species)

Seed

GAGGUAG

Species

Rock pigeon (Columba livia)

MiRBase ID

cli-let-7a-2

Paralogues

Cli-Let-7-P1c Cli-Let-7-P2a1 Cli-Let-7-P2a2 Cli-Let-7-P2a4 Cli-Let-7-P2b1 Cli-Let-7-P2b2 Cli-Let-7-P2b4 Cli-Let-7-P2c1 Cli-Let-7-P2c2 Cli-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P1d Ami-Let-7-P1d Bge-Let-7 Bpl-Let-7 Bta-Let-7-P1d Cfa-Let-7-P1d Cgi-Let-7 Cin-Let-7-P1 Cmi-Let-7-P1d Cpi-Let-7-P1d Cpo-Let-7-P1d Cte-Let-7 Dan-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P1d Dpu-Let-7 Dre-Let-7-P1d1 Dre-Let-7-P1d2 Dsi-Let-7 Dya-Let-7 Esc-Let-7 Ete-Let-7-P1d Gga-Let-7-P1d Gja-Let-7-P1d Gmo-Let-7-P1d1 Gmo-Let-7-P1d2 Hme-Let-7 Hsa-Let-7-P1d Isc-Let-7 Lan-Let-7 Lch-Let-7-P1d Lgi-Let-7 Loc-Let-7-P1d Mal-Let-7-P1d1 Mal-Let-7-P1d2 Mdo-Let-7-P1d Mml-Let-7-P1d Mmu-Let-7-P1d Mun-Let-7-P1d Npo-Let-7 Oan-Let-7-P1d Obi-Let-7 Ocu-Let-7-P1d Ovu-Let-7 Pbv-Let-7-P1d Pfl-Let-7 Pmi-Let-7 Rno-Let-7-P1d Sha-Let-7-P1d Sko-Let-7 Spt-Let-7-P1d Spu-Let-7 Sto-Let-7-P1d Tca-Let-7 Tgu-Let-7-P1d Tni-Let-7-P1d1 Tni-Let-7-P1d2 Xbo-Let-7

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(colLiv2)

scaffold367: 862707-862773 [-]

Clustered miRNAs
(< 50kb from Let-7-P1d)

Mir-10-P3d scaffold367: 846267-846328 [-]
Let-7-P1d scaffold367: 862707-862773 [-]
Mir-10-P2d scaffold367: 869683-869739 [-]

Precursor
(pre-Mir +30nt flank)

UUCAGCAUUUUUGACCGCAUGCAUCCAGGUUGAGGUAGUAGGUUGUAUAGUUUAGAAUUACACCAAGGGAGAUAACUGUACAACCUCCUAGCUUUCCUUGGGUCUUGCACAGAACGGCGUGAUGAGC

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Structure

        10        20           30        40        50        60   
UUCAGCAUUUUUGACCGCA    ---|     UU   G   U             UAGAAUUACA 
                   UGCA   UCCAGG  GAG UAG AGGUUGUAUAGUU          \
                   ACGU   GGGUUC  UUC AUC UCCAACAUGUCAA          C
CGAGUAGUGCGGCAAGAC-    UCU^     CU   G   C             UAGAGGGAAC 
     120       110        100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Cl	Cl	Cl	Cl	Cl	To

Mature sequence

Cli-Let-7-P1d_5p

mirBase accession

MIMAT0038374

Sequence

0- UGAGGUAGUAGGUUGUAUAGUU -22

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Star sequence

Cli-Let-7-P1d_3p*

mirBase accession

MIMAT0038376

Sequence

45- CUGUACAACCUCCUAGCUUUCC -67

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