MirGeneDB 2.1

MirGeneDB ID

Cfa-Let-7-P1d

Family name LET-7 (all species)
Seed GAGGUAG
Species Dog (Canis familiaris)
MiRBase ID cfa-let-7a-2
Paralogues Cfa-Let-7-P1b  Cfa-Let-7-P1c  Cfa-Let-7-P2a1  Cfa-Let-7-P2a2  Cfa-Let-7-P2a3  Cfa-Let-7-P2b1  Cfa-Let-7-P2b2  Cfa-Let-7-P2b3  Cfa-Let-7-P2c1  Cfa-Let-7-P2c2  Cfa-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P1d  Ami-Let-7-P1d  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P1d  Cgi-Let-7  Cin-Let-7-P1  Cli-Let-7-P1d  Cmi-Let-7-P1d  Cpi-Let-7-P1d  Cpo-Let-7-P1d  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P1d  Dpu-Let-7  Dre-Let-7-P1d1  Dre-Let-7-P1d2  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P1d  Gga-Let-7-P1d  Gja-Let-7-P1d  Gmo-Let-7-P1d1  Gmo-Let-7-P1d2  Hme-Let-7  Hsa-Let-7-P1d  Isc-Let-7  Lan-Let-7  Lch-Let-7-P1d  Lgi-Let-7  Loc-Let-7-P1d  Mal-Let-7-P1d1  Mal-Let-7-P1d2  Mdo-Let-7-P1d  Mml-Let-7-P1d  Mmu-Let-7-P1d  Mun-Let-7-P1d  Npo-Let-7  Oan-Let-7-P1d  Obi-Let-7  Ocu-Let-7-P1d  Ovu-Let-7  Pbv-Let-7-P1d  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P1d  Sha-Let-7-P1d  Sko-Let-7  Spt-Let-7-P1d  Spu-Let-7  Sto-Let-7-P1d  Tca-Let-7  Tgu-Let-7-P1d  Tni-Let-7-P1d1  Tni-Let-7-P1d2  Xbo-Let-7 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(canFam3_add)
chr5: 12052802-12052868 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P1d)
Mir-10-P2d chr5: 12047369-12047425 [+] UCSC Ensembl
Let-7-P1d chr5: 12052802-12052868 [+] UCSC Ensembl
Mir-10-P3d chr5: 12097672-12097733 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCAGCCAUUGUGACUGCAUGUUCCCAGGUUGAGGUAGUAGGUUGUAUAGUUUAGAAUUACAUCAAGGGAGAUAACUGUACAGCCUCCUAGCUUUCCUUGGGUCUUGCACAAAGCAACAUGCCGAGA
Get precursor sequence
Structure
        10        20           30        40        50        60   
UCCAGCCAUUGUGACUGCA   U---|     UU   G   U             UAGAAUUACA 
                   UGU    CCCAGG  GAG UAG AGGUUGUAUAGUU          \
                   ACG    GGGUUC  UUC AUC UCCGACAUGUCAA          U
AGAGCCGUACAACGAAAC-   UUCU^     CU   G   C             UAGAGGGAAC 
     120       110        100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Let-7-P1d_5p

mirBase accessionMIMAT0006594
Sequence
0- UGAGGUAGUAGGUUGUAUAGUU -22
Get sequence
Proposed targets TargetScanVert: cfa-let-7a
miRDB: MIMAT0006594
Star sequence

Cfa-Let-7-P1d_3p*

mirBase accessionNone
Sequence
45- CUGUACAGCCUCCUAGCUUUCC -67
Get sequence