Let-7-P1c

MirGeneDB ID

Cfa-Let-7-P1c

Family name

LET-7 (all species)

Seed

GAGGUAG

Species

Dog (Canis familiaris)

MiRBase ID

cfa-let-7c

Paralogues

Cfa-Let-7-P1b Cfa-Let-7-P1d Cfa-Let-7-P2a1 Cfa-Let-7-P2a2 Cfa-Let-7-P2a3 Cfa-Let-7-P2b1 Cfa-Let-7-P2b2 Cfa-Let-7-P2b3 Cfa-Let-7-P2c1 Cfa-Let-7-P2c2 Cfa-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P1c Ami-Let-7-P1c Bge-Let-7 Bpl-Let-7 Bta-Let-7-P1c Cgi-Let-7 Cin-Let-7-P1 Cli-Let-7-P1c Cpi-Let-7-P1c Cpo-Let-7-P1c Cte-Let-7 Dan-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P1c Dpu-Let-7 Dre-Let-7-P1c1 Dre-Let-7-P1c2 Dsi-Let-7 Dya-Let-7 Esc-Let-7 Ete-Let-7-P1c Gga-Let-7-P1c Gja-Let-7-P1c Gmo-Let-7-P1c2 Hme-Let-7 Hsa-Let-7-P1c Isc-Let-7 Lan-Let-7 Lch-Let-7-P1c Lgi-Let-7 Loc-Let-7-P1c Mal-Let-7-P1c2 Mml-Let-7-P1c Mmu-Let-7-P1c Mun-Let-7-P1c Npo-Let-7 Oan-Let-7-P1c Obi-Let-7 Ocu-Let-7-P1c Ovu-Let-7 Pbv-Let-7-P1c Pfl-Let-7 Pmi-Let-7 Rno-Let-7-P1c Sha-Let-7-P1c Sko-Let-7 Spt-Let-7-P1c Spu-Let-7 Sto-Let-7-P1c Tca-Let-7 Tgu-Let-7-P1c Xbo-Let-7 Xla-Let-7-P1c3 Xla-Let-7-P1c4 Xtr-Let-7-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(canFam3_add)

chr31: 13259522-13259588 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Let-7-P1c)

Mir-10-P2c chr31: 13258782-13258840 [+] UCSC Ensembl
Let-7-P1c chr31: 13259522-13259588 [+] UCSC Ensembl
Mir-10-P3c chr31: 13304980-13305040 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGCAACAUUGGAAGCUGUGUGCAUCCGGGUUGAGGUAGUAGGUUGUAUGGUUUAGAGUUACACCCUGGGAGUUAACUGUACAACCUUCUAGCUUUCCUUGGAGCACACUUGAGCCAUCGAGGAAUUC

Get precursor sequence

Structure

        10           20        30        40        50        60   
AGCAACAUUGGAAGCUG---|    A      UU   G   U             UAGAGUUACA 
                    UGUGC UCCGGG  GAG UAG AGGUUGUAUGGUU          \
                    ACACG AGGUUC  UUC AUC UCCAACAUGUCAA          C
CUUAAGGAGCUACCGAGUUC^    -      CU   G   U             UUGAGGGUCC 
     120       110        100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Ce	Co	He	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Let-7-P1c_5p

mirBase accession

MIMAT0006669

Sequence

0- UGAGGUAGUAGGUUGUAUGGUU -22

Get sequence

Proposed targets

TargetScanVert: cfa-let-7c
miRDB: MIMAT0006669

Star sequence

Cfa-Let-7-P1c_3p*

mirBase accession

None

Sequence

45- CUGUACAACCUUCUAGCUUUCC -67

Get sequence