MirGeneDB 2.1

MirGeneDB ID

Xla-Let-7-P1c3

Family name LET-7 (all species)
Seed GAGGUAG
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Let-7-P1b3  Xla-Let-7-P1b4  Xla-Let-7-P1c4  Xla-Let-7-P2a1c  Xla-Let-7-P2a1d  Xla-Let-7-P2a2c  Xla-Let-7-P2a2d  Xla-Let-7-P2a3d  Xla-Let-7-P2b2c  Xla-Let-7-P2b2d  Xla-Let-7-P2b3c  Xla-Let-7-P2b3d  Xla-Let-7-P2c2  Xla-Let-7-P2c3c  Xla-Let-7-P2c3d  Xla-Let-7-P2c4 
Orthologues Aae-Let-7  Aca-Let-7-P1c  Ami-Let-7-P1c  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P1c  Cfa-Let-7-P1c  Cgi-Let-7  Cin-Let-7-P1  Cli-Let-7-P1c  Cpi-Let-7-P1c  Cpo-Let-7-P1c  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P1c  Dpu-Let-7  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P1c  Gga-Let-7-P1c  Gja-Let-7-P1c  Hme-Let-7  Hsa-Let-7-P1c  Isc-Let-7  Lan-Let-7  Lch-Let-7-P1c  Lgi-Let-7  Loc-Let-7-P1c  Mml-Let-7-P1c  Mmu-Let-7-P1c  Mun-Let-7-P1c  Npo-Let-7  Oan-Let-7-P1c  Obi-Let-7  Ocu-Let-7-P1c  Ovu-Let-7  Pbv-Let-7-P1c  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P1c  Sha-Let-7-P1c  Sko-Let-7  Spt-Let-7-P1c  Spu-Let-7  Sto-Let-7-P1c  Tca-Let-7  Tgu-Let-7-P1c  Xbo-Let-7  Xtr-Let-7-P1c 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)
NC_030727.1: 9126439-9126505 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGACUACACUGGAAAUGUGUGCAUCCAGGUUGAGGUAGUAGGUUGUAUGGUUUAGAAUGACACCCUGGGAGUUAACUGUACAACCUUCUAGCUUUCCUUGGAGCUCACUUGAACCAUCGAAGAAUCA
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Structure
        10           20        30        40        50        60   
GGACUACACUGGAAAUG---| U  A      UU   G   U             UAGAAUGACA 
                    UG GC UCCAGG  GAG UAG AGGUUGUAUGGUU          \
                    AC CG AGGUUC  UUC AUC UCCAACAUGUCAA          C
ACUAAGAAGCUACCAAGUUC^ U  -      CU   G   U             UUGAGGGUCC 
     120       110        100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Eg He Re St St St St
Mature sequence

Xla-Let-7-P1c3_5p

mirBase accessionNone
Sequence
0- UGAGGUAGUAGGUUGUAUGGUU -22
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Star sequence

Xla-Let-7-P1c3_3p*

mirBase accessionNone
Sequence
45- CUGUACAACCUUCUAGCUUUCC -67
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