MirGeneDB 3.0
MirGeneDB ID

Xtr-Let-7-P1c

Family name LET-7 (all species)
Seed GAGGUAG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-let-7c
Paralogues Xtr-Let-7-P1b  Xtr-Let-7-P2a1  Xtr-Let-7-P2a2  Xtr-Let-7-P2a3  Xtr-Let-7-P2b2  Xtr-Let-7-P2b3  Xtr-Let-7-P2c2  Xtr-Let-7-P2c3  Xtr-Let-7-P2c4 
Orthologues Aae-Let-7  Aca-Let-7-P1c  Aga-Let-7  Agr-Let-7  Ami-Let-7-P1c  Bge-Let-7  Bko-Let-7  Bpl-Let-7  Bta-Let-7-P1c  Cfa-Let-7-P1c  Cin-Let-7-P1  Cja-Let-7-P1c  Cli-Let-7-P1c  Cpi-Let-7-P1c  Cpo-Let-7-P1c  Cte-Let-7  Dan-Let-7  Dlo-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P1c  Dpu-Let-7  Dre-Let-7-P1c1  Dre-Let-7-P1c2  Dsi-Let-7  Dya-Let-7  Eba-Let-7  Eca-Let-7-P1c  Egr-Let-7  Esc-Let-7  Ete-Let-7-P1c  Gga-Let-7-P1c  Gja-Let-7-P1c  Gmo-Let-7-P1c2  Gpa-Let-7  Gsa-Let-7  Gsp-Let-7  Hme-Let-7  Hmi-Let-7  Hru-Let-7  Hsa-Let-7-P1c  Isc-Let-7  Laf-Let-7-P1c  Lan-Let-7  Lch-Let-7-P1c  Lgi-Let-7  Lhy-Let-7  Llo-Let-7  Loc-Let-7-P1c  Mal-Let-7-P1c2  Mgi-Let-7  Mml-Let-7-P1c  Mmr-Let-7-P1c  Mmu-Let-7-P1c  Mom-Let-7  Mun-Let-7-P1c  Neu-Let-7-P1c  Npo-Let-7  Oan-Let-7-P1c  Obi-Let-7  Ocu-Let-7-P1c  Ofu-Let-7  Ovu-Let-7  Pab-Let-7-P1c  Pau-Let-7  Pbv-Let-7-P1c  Pca-Let-7  Pcr-Let-7  Pdu-Let-7  Pfl-Let-7  Ple-Let-7  Pmi-Let-7  Pve-Let-7  Rno-Let-7-P1c  Rph-Let-7  Sha-Let-7-P1c  Sko-Let-7  Sma-Let-7  Sne-Let-7  Snu-Let-7  Spt-Let-7-P1c  Spu-Let-7  Sro-Let-7  Sto-Let-7-P1c  Tca-Let-7  Tgu-Let-7-P1c  Tur-Let-7  War-Let-7  Xbo-Let-7  Xla-Let-7-P1c3  Xla-Let-7-P1c4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)		 chr2: 23121735-23121801 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P1c)		 Mir-10-P2c chr2: 23121041-23121099 [+] UCSC Ensembl
Let-7-P1c chr2: 23121735-23121801 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGACUACACUGGAAAUGUGUGCAUCCAGGUUGAGGUAGUAGGUUGUAUGGUUUAGAAUGACACCCUGGGAGUUAACUGUACAACCUUCUAGCUUUCCUUGGAGCUCACUUGAACCAUCGAAGAAUCA
Get precursor sequence
Structure
        10           20        30        40        50        60   
GGACUACACUGGAAAUG---| U  A      UU   G   U             UAGAAUGACA 
                    UG GC UCCAGG  GAG UAG AGGUUGUAUGGUU          \
                    AC CG AGGUUC  UUC AUC UCCAACAUGUCAA          C
ACUAAGAAGCUACCAAGUUC^ U  -      CU   G   U             UUGAGGGUCC 
     120       110        100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
An Br Em Em He Ve
Mature sequence

Xtr-Let-7-P1c_5p
mirBase accessionMIMAT0003644
Sequence 
0- UGAGGUAGUAGGUUGUAUGGUU -22
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Proposed targets TargetScanVert: xtr-let-7c
Star sequence

Xtr-Let-7-P1c_3p*
mirBase accessionNone
Sequence 
45- CUGUACAACCUUCUAGCUUUCC -67
Get sequence