MirGeneDB 3.0
MirGeneDB ID

Xtr-Let-7-P2c4

Family name LET-7 (all species)
Seed GAGGUAG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-let-7b
Paralogues Xtr-Let-7-P1b  Xtr-Let-7-P1c  Xtr-Let-7-P2a1  Xtr-Let-7-P2a2  Xtr-Let-7-P2a3  Xtr-Let-7-P2b2  Xtr-Let-7-P2b3  Xtr-Let-7-P2c2  Xtr-Let-7-P2c3 
Orthologues Aae-Let-7  Aga-Let-7  Agr-Let-7  Bge-Let-7  Bko-Let-7  Bpl-Let-7  Cmi-Let-7-P2c4  Cte-Let-7  Dan-Let-7  Dlo-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dpu-Let-7  Dsi-Let-7  Dya-Let-7  Eba-Let-7  Egr-Let-7  Esc-Let-7  Gpa-Let-7  Gsa-Let-7  Gsp-Let-7  Hme-Let-7  Hmi-Let-7  Hru-Let-7  Isc-Let-7  Lan-Let-7  Lch-Let-7-P2c4  Lgi-Let-7  Lhy-Let-7  Llo-Let-7  Mgi-Let-7  Mom-Let-7  Mun-Let-7-P2c4  Npo-Let-7  Obi-Let-7  Ofu-Let-7  Ovu-Let-7  Pau-Let-7  Pca-Let-7  Pcr-Let-7  Pdu-Let-7  Pfl-Let-7  Ple-Let-7  Pmi-Let-7  Pve-Let-7  Rph-Let-7  Sko-Let-7  Sma-Let-7  Sne-Let-7  Snu-Let-7  Spu-Let-7  Sro-Let-7  Tca-Let-7  Tur-Let-7  War-Let-7  Xbo-Let-7  Xla-Let-7-P2c4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)		 chr2: 74186427-74186500 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUCAGCCAGAUCUUGCCCAGCUCUCUGGCUGAGGUAGUAGUUUGUGUAGUUAGGGGGCAGUGGUGUUUGCCCAUGGAGAUAACUAGACAAACUACUGCCUUGCCAGCGGUGGGCACAUUCGUCUGCAUUACGC
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Structure
        10        20           30        40        50        60       
UUUCAGCCAGAUCUUGCCCA    U---|    U               G     AGGGGGCAGUGGUG 
                    GCUC    CUGGC GAGGUAGUAGUUUGU UAGUU              \
                    CGGG    GACCG UUCCGUCAUCAAACA AUCAA              U
CGCAUUACGUCUGCUUACA-    UGGC^    -               G     UAGAGGUACCCGUU 
  130       120        110        100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
An Br Em Em He Ve
Mature sequence

Xtr-Let-7-P2c4_5p
mirBase accessionMIMAT0003550
Sequence 
0- UGAGGUAGUAGUUUGUGUAGUU -22
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Proposed targets TargetScanVert: xtr-let-7b
Star sequence

Xtr-Let-7-P2c4_3p*
mirBase accessionNone
Sequence 
53- CUAGACAAACUACUGCCUUGC -74
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