| MirGeneDB ID | Lch-Let-7-P2c4 |
|---|---|
| Family name | LET-7 (all species) |
| Seed | GAGGUAG |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Let-7-P1b Lch-Let-7-P1c Lch-Let-7-P1d Lch-Let-7-P2a1 Lch-Let-7-P2a2 Lch-Let-7-P2a3 Lch-Let-7-P2a4 Lch-Let-7-P2b1 Lch-Let-7-P2b2 Lch-Let-7-P2b4 Lch-Let-7-P2c1 Lch-Let-7-P2c2 Lch-Let-7-P2c3 |
| Orthologues | Aae-Let-7 Aga-Let-7 Agr-Let-7 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Cmi-Let-7-P2c4 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dpu-Let-7 Dsi-Let-7 Dya-Let-7 Eba-Let-7 Egr-Let-7 Esc-Let-7 Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Isc-Let-7 Lan-Let-7 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Mgi-Let-7 Mom-Let-7 Mun-Let-7-P2c4 Npo-Let-7 Obi-Let-7 Ofu-Let-7 Ovu-Let-7 Pau-Let-7 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rph-Let-7 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spu-Let-7 Sro-Let-7 Tca-Let-7 Tur-Let-7 War-Let-7 Xbo-Let-7 Xla-Let-7-P2c4 Xtr-Let-7-P2c4 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Bilateria |
| Genome context (LatCha1_add) |
JH126576.1: 2453770-2453844 [-] Ensembl |
| Precursor (pre-Mir +30nt flank) | AGACUCACCAGAUAUGGACAGUCCACUGACUGAGGUAGUAGUUUGUGUAGUUAGAGGGUAGUGAUAUUGCCCAUUUGGAGAUAACUAUACAAUCUACUGCCUUGCCAGUGCUGUUCAGACGUAGCAACGAAGACUGet precursor sequence |
| Structure | 10 20 30 40 50 60 AGACUCACCAGAUAUGG----| UC ACU U AGAGGGUAGUGAUA ACAG CACUG GAGGUAGUAG UUGUGUAGUU U UGUC GUGAC UUCCGUCAUC AACAUAUCAA U UCAGAAGCAACGAUGCAGACU^ -- CG- U UAGAGGUUUACCCG 130 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Lch-Let-7-P2c4_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGAGGUAGUAGUUUGUGUAGUU -22
Get sequence
|
| Star sequence | Lch-Let-7-P2c4_3p* (predicted) |
| mirBase accession | None |
| Sequence |
54- CUAUACAAUCUACUGCCUUGC -75
Get sequence
|
