MirGeneDB 2.1
MirGeneDB ID

Lch-Let-7-P2c2

Family name LET-7 (all species)
Seed GAGGUAG
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Let-7-P1b  Lch-Let-7-P1c  Lch-Let-7-P1d  Lch-Let-7-P2a1  Lch-Let-7-P2a2  Lch-Let-7-P2a3  Lch-Let-7-P2a4  Lch-Let-7-P2b1  Lch-Let-7-P2b2  Lch-Let-7-P2b4  Lch-Let-7-P2c1  Lch-Let-7-P2c3  Lch-Let-7-P2c4 
Orthologues Aae-Let-7  Aca-Let-7-P2c2  Ami-Let-7-P2c2  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P2c2  Cfa-Let-7-P2c2  Cgi-Let-7  Cli-Let-7-P2c2  Cmi-Let-7-P2c2  Cpi-Let-7-P2c2  Cpo-Let-7-P2c2  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2c2  Dpu-Let-7  Dre-Let-7-P2c2b  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P2c2  Gga-Let-7-P2c2  Gja-Let-7-P2c2  Gmo-Let-7-P2c2a  Gmo-Let-7-P2c2b  Hme-Let-7  Hsa-Let-7-P2c2  Isc-Let-7  Lan-Let-7  Lgi-Let-7  Loc-Let-7-P2c2  Mal-Let-7-P2c2b  Mdo-Let-7-P2c2  Mml-Let-7-P2c2  Mmu-Let-7-P2c2  Mun-Let-7-P2c2  Npo-Let-7  Oan-Let-7-P2c2  Obi-Let-7  Ocu-Let-7-P2c2  Ovu-Let-7  Pbv-Let-7-P2c2  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P2c2  Sha-Let-7-P2c2  Sko-Let-7  Spt-Let-7-P2c2  Spu-Let-7  Sto-Let-7-P2c2  Tca-Let-7  Tgu-Let-7-P2c2  Tni-Let-7-P2c2a  Tni-Let-7-P2c2b  Xbo-Let-7  Xla-Let-7-P2c2  Xtr-Let-7-P2c2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LatCha1_add)		 JH127196.1: 819664-819740 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUUUGGUUAUGCAAGCGCCAUGGCCCUGGCUGAGGUAGUAGUUUGUGCUGUUGGUAGGGUUGUGACAUUGCCCGCUAUGGAGAUAACUGCGCAAGCUACUGCCUUGCUAGUGCUGGUGAUUAGCUACAGAUGGAGAC
Get precursor sequence
Structure
        10            20        30        40        50        60        
AUUUGGUUAUGCAAGCG----|  UG  C     U                 U   GGUAGGGUUGUGACA 
                     CCA  GC CUGGC GAGGUAGUAGUUUGUGC GUU               U
                     GGU  CG GAUCG UUCCGUCAUCGAACGCG CAA               U
CAGAGGUAGACAUCGAUUAGU^  --  U     -                 U   UAGAGGUAUCGCCCG 
     130       120         110        100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Lch-Let-7-P2c2_5p (predicted)
mirBase accessionNone
Sequence 
0- UGAGGUAGUAGUUUGUGCUGUU -22
Get sequence
Star sequence

Lch-Let-7-P2c2_3p* (predicted)
mirBase accessionNone
Sequence 
56- CUGCGCAAGCUACUGCCUUGC -77
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