Let-7-P2c2

MirGeneDB ID

Eca-Let-7-P2c2

Family name

LET-7 (all species)

Seed

GAGGUAG

Species

Horse (Equus caballus)

MiRBase ID

Paralogues

Eca-Let-7-P1b Eca-Let-7-P1c Eca-Let-7-P1d Eca-Let-7-P2a1 Eca-Let-7-P2a2 Eca-Let-7-P2a3 Eca-Let-7-P2b1 Eca-Let-7-P2b2 Eca-Let-7-P2b3 Eca-Let-7-P2c1 Eca-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P2c2 Aga-Let-7 Agr-Let-7 Ami-Let-7-P2c2 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P2c2 Cfa-Let-7-P2c2 Cja-Let-7-P2c2 Cli-Let-7-P2c2 Cmi-Let-7-P2c2 Cpi-Let-7-P2c2 Cpo-Let-7-P2c2 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P2c2 Dpu-Let-7 Dre-Let-7-P2c2b Dsi-Let-7 Dya-Let-7 Eba-Let-7 Egr-Let-7 Esc-Let-7 Ete-Let-7-P2c2 Gga-Let-7-P2c2 Gja-Let-7-P2c2 Gmo-Let-7-P2c2a Gmo-Let-7-P2c2b Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P2c2 Isc-Let-7 Laf-Let-7-P2c2 Lan-Let-7 Lch-Let-7-P2c2 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P2c2 Mal-Let-7-P2c2b Mdo-Let-7-P2c2 Mgi-Let-7 Mml-Let-7-P2c2 Mmr-Let-7-P2c2 Mmu-Let-7-P2c2 Mom-Let-7 Mun-Let-7-P2c2 Neu-Let-7-P2c2 Npo-Let-7 Oan-Let-7-P2c2 Obi-Let-7 Ocu-Let-7-P2c2 Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P2c2 Pau-Let-7 Pbv-Let-7-P2c2 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P2c2 Rph-Let-7 Sha-Let-7-P2c2 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P2c2 Spu-Let-7 Sro-Let-7 Sto-Let-7-P2c2 Tca-Let-7 Tgu-Let-7-P2c2 Tni-Let-7-P2c2a Tni-Let-7-P2c2b Tur-Let-7 War-Let-7 Xbo-Let-7 Xla-Let-7-P2c2 Xtr-Let-7-P2c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009153.1: 80187889-80187965 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGCGCGGCCGCCCGACACCAUGGCCCUGGCUGAGGUAGUAGUUUGUGCUGUUGGUCGGGUUGUGACACUGCCCGCUGUGGAGAUAACUGCGCAAGCUACUGCCUUGCUAGUGCUGGUGAUGCUCAGCGCCCGCGCGA

Get precursor sequence

Structure

        10            20        30        40        50        60        
GGCGCGGCCGCCCGACA----|  UG  C     U                 U   GGUCGGGUUGUGACA 
                     CCA  GC CUGGC GAGGUAGUAGUUUGUGC GUU               C
                     GGU  CG GAUCG UUCCGUCAUCGAACGCG CAA               U
AGCGCGCCCGCGACUCGUAGU^  --  U     -                 U   UAGAGGUGUCGCCCG 
     130       120         110        100        90        80        70

Deep sequencing

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3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Let-7-P2c2_5p

mirBase accession

None

Sequence

0- UGAGGUAGUAGUUUGUGCUGUU -22

Get sequence

Star sequence

Eca-Let-7-P2c2_3p*

mirBase accession

None

Sequence

56- CUGCGCAAGCUACUGCCUUGC -77

Get sequence