Let-7-P2b2

MirGeneDB ID

Eca-Let-7-P2b2

Family name

LET-7 (all species)

Seed

GAGGUAG

Species

Horse (Equus caballus)

MiRBase ID

Paralogues

Eca-Let-7-P1b Eca-Let-7-P1c Eca-Let-7-P1d Eca-Let-7-P2a1 Eca-Let-7-P2a2 Eca-Let-7-P2a3 Eca-Let-7-P2b1 Eca-Let-7-P2b3 Eca-Let-7-P2c1 Eca-Let-7-P2c2 Eca-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P2b2 Aga-Let-7 Agr-Let-7 Ami-Let-7-P2b2 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P2b2 Cfa-Let-7-P2b2 Cja-Let-7-P2b2 Cli-Let-7-P2b2 Cmi-Let-7-P2b2 Cpi-Let-7-P2b2 Cpo-Let-7-P2b2 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P2b2 Dpu-Let-7 Dre-Let-7-P2b2a Dre-Let-7-P2b2b Dsi-Let-7 Dya-Let-7 Eba-Let-7 Egr-Let-7 Esc-Let-7 Ete-Let-7-P2b2 Gga-Let-7-P2b2 Gja-Let-7-P2b2 Gmo-Let-7-P2b2a Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P2b2 Isc-Let-7 Laf-Let-7-P2b2 Lan-Let-7 Lch-Let-7-P2b2 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P2b2 Mal-Let-7-P2b2a Mal-Let-7-P2b2b Mdo-Let-7-P2b2 Mgi-Let-7 Mml-Let-7-P2b2 Mmr-Let-7-P2b2 Mmu-Let-7-P2b2 Mom-Let-7 Mun-Let-7-P2b2 Neu-Let-7-P2b2 Npo-Let-7 Oan-Let-7-P2b2 Obi-Let-7 Ocu-Let-7-P2b2 Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P2b2 Pau-Let-7 Pbv-Let-7-P2b2 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P2b2 Rph-Let-7 Sha-Let-7-P2b2 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P2b2 Spu-Let-7 Sro-Let-7 Sto-Let-7-P2b2 Tca-Let-7 Tgu-Let-7-P2b2 Tni-Let-7-P2b2a Tni-Let-7-P2b2b Tur-Let-7 War-Let-7 Xbo-Let-7 Xla-Let-7-P2b2c Xla-Let-7-P2b2d Xtr-Let-7-P2b2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009175.1: 43149115-43149190 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGACCCUCCCGCCCCUGGGCGCCGGCGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGCAGUGAUGUUGCCCCCUCGGAAGAUAACUAUACAACCUACUGCCUUCCCCGAGGAGCCCCGCGACACGUGCCCGCGGG

Get precursor sequence

Structure

        10           20        30        40        50        60        
GGACCCUCCCGCCCCUG---|  G  GG     U                     UCAGGGCAGUGAUGU 
                    GGC CC  CGGGG GAGGUAGUAGGUUGUGUGGUU               \
                    CCG GG  GCCCC UUCCGUCAUCCAACAUAUCAA               U
GGGCGCCCGUGCACAGCGCC^  A  A-     -                     UAGAAGGCUCCCCCG 
    130       120       110         100        90        80        70

Deep sequencing

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3' NTU

Yes

Motifs

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Let-7-P2b2_5p

mirBase accession

None

Sequence

0- UGAGGUAGUAGGUUGUGUGGUU -22

Get sequence

Star sequence

Eca-Let-7-P2b2_3p*

mirBase accession

None

Sequence

55- CUAUACAACCUACUGCCUUCC -76

Get sequence