Let-7-P2b2

MirGeneDB ID

Gga-Let-7-P2b2

Family name

LET-7 (all species)

Seed

GAGGUAG

Species

Chicken (Gallus gallus)

MiRBase ID

gga-let-7b

Paralogues

Gga-Let-7-P1c Gga-Let-7-P1d Gga-Let-7-P2a1 Gga-Let-7-P2a2 Gga-Let-7-P2a4 Gga-Let-7-P2b1 Gga-Let-7-P2b4 Gga-Let-7-P2c1 Gga-Let-7-P2c2 Gga-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P2b2 Aga-Let-7 Agr-Let-7 Ami-Let-7-P2b2 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P2b2 Cfa-Let-7-P2b2 Cja-Let-7-P2b2 Cli-Let-7-P2b2 Cmi-Let-7-P2b2 Cpi-Let-7-P2b2 Cpo-Let-7-P2b2 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P2b2 Dpu-Let-7 Dre-Let-7-P2b2a Dre-Let-7-P2b2b Dsi-Let-7 Dya-Let-7 Eba-Let-7 Eca-Let-7-P2b2 Egr-Let-7 Esc-Let-7 Ete-Let-7-P2b2 Gja-Let-7-P2b2 Gmo-Let-7-P2b2a Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P2b2 Isc-Let-7 Laf-Let-7-P2b2 Lan-Let-7 Lch-Let-7-P2b2 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P2b2 Mal-Let-7-P2b2a Mal-Let-7-P2b2b Mdo-Let-7-P2b2 Mgi-Let-7 Mml-Let-7-P2b2 Mmr-Let-7-P2b2 Mmu-Let-7-P2b2 Mom-Let-7 Mun-Let-7-P2b2 Neu-Let-7-P2b2 Npo-Let-7 Oan-Let-7-P2b2 Obi-Let-7 Ocu-Let-7-P2b2 Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P2b2 Pau-Let-7 Pbv-Let-7-P2b2 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P2b2 Rph-Let-7 Sha-Let-7-P2b2 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P2b2 Spu-Let-7 Sro-Let-7 Sto-Let-7-P2b2 Tca-Let-7 Tgu-Let-7-P2b2 Tni-Let-7-P2b2a Tni-Let-7-P2b2b Tur-Let-7 War-Let-7 Xbo-Let-7 Xla-Let-7-P2b2c Xla-Let-7-P2b2d Xtr-Let-7-P2b2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

1: 71199661-71199737 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Let-7-P2b2)

Let-7-P2a2 1: 71198830-71198900 [+] UCSC Ensembl
Let-7-P2b2 1: 71199661-71199737 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCAGAAGAUCCGCCUGAUGCUCUAACAGGAUGAGGUAGUAGGUUGUGUGGUUUCAGGGUAGUGAUUUUGCCCCAAUCAGGAGAUAACUAUACAACCUACUGCCUUCCCUGAUAGGCAGCGUAACAUCAGUGUCUUAA

Get precursor sequence

Structure

        10           20        30        40        50        60        
UCAGAAGAUCCGCCUGA---|  U   A    AU                     UCAGGGUAGUGAUUU 
                    UGC CUA CAGG  GAGGUAGUAGGUUGUGUGGUU               U
                    ACG GAU GUCC  UUCCGUCAUCCAACAUAUCAA               G
AAUUCUGUGACUACAAUGCG^  -   A    C-                     UAGAGGACUAACCCC 
     130       120        110        100        90        80        70

Deep sequencing

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3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Let-7-P2b2_5p

mirBase accession

MIMAT0001102

Sequence

0- UGAGGUAGUAGGUUGUGUGGUU -22

Get sequence

Proposed targets

TargetScanVert: gga-let-7b
miRDB: MIMAT0001102

Star sequence

Gga-Let-7-P2b2_3p*

mirBase accession

None

Sequence

56- CUAUACAACCUACUGCCUUCC -77

Get sequence