MirGeneDB 3.0
MirGeneDB ID

Ami-Let-7-P2b2

Family name LET-7 (all species)
Seed GAGGUAG
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-let-7b
Paralogues Ami-Let-7-P1b  Ami-Let-7-P1c  Ami-Let-7-P1d  Ami-Let-7-P2a1  Ami-Let-7-P2a2  Ami-Let-7-P2a3  Ami-Let-7-P2a4  Ami-Let-7-P2b1  Ami-Let-7-P2b3  Ami-Let-7-P2b4  Ami-Let-7-P2c1  Ami-Let-7-P2c2  Ami-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2b2  Aga-Let-7  Agr-Let-7  Bge-Let-7  Bko-Let-7  Bpl-Let-7  Bta-Let-7-P2b2  Cfa-Let-7-P2b2  Cja-Let-7-P2b2  Cli-Let-7-P2b2  Cmi-Let-7-P2b2  Cpi-Let-7-P2b2  Cpo-Let-7-P2b2  Cte-Let-7  Dan-Let-7  Dlo-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2b2  Dpu-Let-7  Dre-Let-7-P2b2a  Dre-Let-7-P2b2b  Dsi-Let-7  Dya-Let-7  Eba-Let-7  Eca-Let-7-P2b2  Egr-Let-7  Esc-Let-7  Ete-Let-7-P2b2  Gga-Let-7-P2b2  Gja-Let-7-P2b2  Gmo-Let-7-P2b2a  Gpa-Let-7  Gsa-Let-7  Gsp-Let-7  Hme-Let-7  Hmi-Let-7  Hru-Let-7  Hsa-Let-7-P2b2  Isc-Let-7  Laf-Let-7-P2b2  Lan-Let-7  Lch-Let-7-P2b2  Lgi-Let-7  Lhy-Let-7  Llo-Let-7  Loc-Let-7-P2b2  Mal-Let-7-P2b2a  Mal-Let-7-P2b2b  Mdo-Let-7-P2b2  Mgi-Let-7  Mml-Let-7-P2b2  Mmr-Let-7-P2b2  Mmu-Let-7-P2b2  Mom-Let-7  Mun-Let-7-P2b2  Neu-Let-7-P2b2  Npo-Let-7  Oan-Let-7-P2b2  Obi-Let-7  Ocu-Let-7-P2b2  Ofu-Let-7  Ovu-Let-7  Pab-Let-7-P2b2  Pau-Let-7  Pbv-Let-7-P2b2  Pca-Let-7  Pcr-Let-7  Pdu-Let-7  Pfl-Let-7  Ple-Let-7  Pmi-Let-7  Pve-Let-7  Rno-Let-7-P2b2  Rph-Let-7  Sha-Let-7-P2b2  Sko-Let-7  Sma-Let-7  Sne-Let-7  Snu-Let-7  Spt-Let-7-P2b2  Spu-Let-7  Sro-Let-7  Sto-Let-7-P2b2  Tca-Let-7  Tgu-Let-7-P2b2  Tni-Let-7-P2b2a  Tni-Let-7-P2b2b  Tur-Let-7  War-Let-7  Xbo-Let-7  Xla-Let-7-P2b2c  Xla-Let-7-P2b2d  Xtr-Let-7-P2b2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017708092.1: 7945991-7946067 [-] UCSC
Clustered miRNAs
(< 50kb from Let-7-P2b2)		 Let-7-P2b2 NW_017708092.1: 7945991-7946067 [-] UCSC
Let-7-P2a2 NW_017708092.1: 7946901-7946971 [-] UCSC
Precursor
(pre-Mir +30nt flank)
UCGAAGGAAUUUCCUGGUGCUCUGGCAGGAUGAGGUAGUAGGUUGUGUGGUUUCAGGGUAGUGAUUUUGCCCCAAUCAGGAGAUAACUAUACAACCUACUGCCUUCCCUGAUGAGCAGUAUUGCAGCAUCUCAGAAA
Get precursor sequence
Structure
        10           20        30        40        50        60        
UCGAAGGAAUUUCCUGG---|    UGG    AU                     UCAGGGUAGUGAUUU 
                    UGCUC   CAGG  GAGGUAGUAGGUUGUGUGGUU               U
                    ACGAG   GUCC  UUCCGUCAUCCAACAUAUCAA               G
AAAGACUCUACGACGUUAUG^    UA-    C-                     UAGAGGACUAACCCC 
     130       120        110        100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ami-Let-7-P2b2_5p
mirBase accessionMIMAT0038003
Sequence 
0- UGAGGUAGUAGGUUGUGUGGUU -22
Get sequence
Star sequence

Ami-Let-7-P2b2_3p*
mirBase accessionMIMAT0038004
Sequence 
56- CUAUACAACCUACUGCCUUCC -77
Get sequence