MirGeneDB 3.0
MirGeneDB ID

Ami-Let-7-P2b3

Family name LET-7 (all species)
Seed GAGGUAG
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-98
Paralogues Ami-Let-7-P1b  Ami-Let-7-P1c  Ami-Let-7-P1d  Ami-Let-7-P2a1  Ami-Let-7-P2a2  Ami-Let-7-P2a3  Ami-Let-7-P2a4  Ami-Let-7-P2b1  Ami-Let-7-P2b2  Ami-Let-7-P2b4  Ami-Let-7-P2c1  Ami-Let-7-P2c2  Ami-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2b3  Aga-Let-7  Agr-Let-7  Bge-Let-7  Bko-Let-7  Bpl-Let-7  Bta-Let-7-P2b3  Cfa-Let-7-P2b3  Cja-Let-7-P2b3  Cpi-Let-7-P2b3  Cpo-Let-7-P2b3  Cte-Let-7  Dan-Let-7  Dlo-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2b3  Dpu-Let-7  Dre-Let-7-P2b3a  Dsi-Let-7  Dya-Let-7  Eba-Let-7  Eca-Let-7-P2b3  Egr-Let-7  Esc-Let-7  Ete-Let-7-P2b3  Gja-Let-7-P2b3  Gmo-Let-7-P2b3a  Gmo-Let-7-P2b3b  Gpa-Let-7  Gsa-Let-7  Gsp-Let-7  Hme-Let-7  Hmi-Let-7  Hru-Let-7  Hsa-Let-7-P2b3  Isc-Let-7  Laf-Let-7-P2b3  Lan-Let-7  Lgi-Let-7  Lhy-Let-7  Llo-Let-7  Loc-Let-7-P2b3  Mal-Let-7-P2b3a  Mgi-Let-7  Mml-Let-7-P2b3  Mmr-Let-7-P2b3  Mmu-Let-7-P2b3  Mom-Let-7  Mun-Let-7-P2b3  Npo-Let-7  Oan-Let-7-P2b3  Obi-Let-7  Ocu-Let-7-P2b3  Ofu-Let-7  Ovu-Let-7  Pab-Let-7-P2b3  Pau-Let-7  Pbv-Let-7-P2b3  Pca-Let-7  Pcr-Let-7  Pdu-Let-7  Pfl-Let-7  Ple-Let-7  Pmi-Let-7  Pve-Let-7  Rno-Let-7-P2b3  Rph-Let-7  Sko-Let-7  Sma-Let-7  Sne-Let-7  Snu-Let-7  Spt-Let-7-P2b3  Spu-Let-7  Sro-Let-7  Sto-Let-7-P2b3  Tca-Let-7  Tni-Let-7-P2b3a  Tni-Let-7-P2b3b  Tur-Let-7  War-Let-7  Xbo-Let-7  Xla-Let-7-P2b3c  Xla-Let-7-P2b3d  Xtr-Let-7-P2b3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017708984.1: 7587-7664 [-] UCSC
Clustered miRNAs
(< 50kb from Let-7-P2b3)		 Let-7-P2b3 NW_017708984.1: 7587-7664 [-] UCSC
Let-7-P2a3 NW_017708984.1: 8044-8111 [-] UCSC
Precursor
(pre-Mir +30nt flank)
UACCUGGGUUCCUUGCUGCCAGCACUAGGGUGAGGUAGUAAGUUGUAUCGUUGGGGGGUCGGGAUUGGAGCCCCGGUGUCGAGGUAACUAUACAACUUACUACUUUCCCUGGUGCUGGCCCUUACUGCAGGGAGCAGG
Get precursor sequence
Structure
        10          20        30        40        50        60         
UACCUGGGUUCCUUGCU--|            U                 C   GGGGGGUCGGGAUUGG 
                   GCCAGCACUAGGG GAGGUAGUAAGUUGUAU GUU                \
                   CGGUCGUGGUCCC UUUCAUCAUUCAACAUA CAA                A
GGACGAGGGACGUCAUUCC^            -                 U   UGGAGCUGUGGCCCCG 
      130       120       110        100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ami-Let-7-P2b3_5p
mirBase accessionMIMAT0038108
Sequence 
0- UGAGGUAGUAAGUUGUAUCGUU -22
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Star sequence

Ami-Let-7-P2b3_3p*
mirBase accessionMIMAT0038109
Sequence 
57- CUAUACAACUUACUACUUUCC -78
Get sequence