MirGeneDB 3.0
MirGeneDB ID

Gmo-Let-7-P2b3b

Family name LET-7 (all species)
Seed GAGGUAG
Species Cod (Gadus morhua)
MiRBase ID gmo-let-7h-2
Paralogues Gmo-Let-7-P1b1  Gmo-Let-7-P1b2  Gmo-Let-7-P1c2  Gmo-Let-7-P1d1  Gmo-Let-7-P1d2  Gmo-Let-7-P2a1a  Gmo-Let-7-P2a2a  Gmo-Let-7-P2a3a  Gmo-Let-7-P2a3b  Gmo-Let-7-P2a4a  Gmo-Let-7-P2a4b  Gmo-Let-7-P2b1a  Gmo-Let-7-P2b2a  Gmo-Let-7-P2b3a  Gmo-Let-7-P2b4a  Gmo-Let-7-P2b4b  Gmo-Let-7-P2c2a  Gmo-Let-7-P2c2b  Gmo-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2b3  Aga-Let-7  Agr-Let-7  Ami-Let-7-P2b3  Bge-Let-7  Bko-Let-7  Bpl-Let-7  Bta-Let-7-P2b3  Cfa-Let-7-P2b3  Cja-Let-7-P2b3  Cpi-Let-7-P2b3  Cpo-Let-7-P2b3  Cte-Let-7  Dan-Let-7  Dlo-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2b3  Dpu-Let-7  Dre-Let-7-P2b3a  Dsi-Let-7  Dya-Let-7  Eba-Let-7  Eca-Let-7-P2b3  Egr-Let-7  Esc-Let-7  Ete-Let-7-P2b3  Gja-Let-7-P2b3  Gpa-Let-7  Gsa-Let-7  Gsp-Let-7  Hme-Let-7  Hmi-Let-7  Hru-Let-7  Hsa-Let-7-P2b3  Isc-Let-7  Laf-Let-7-P2b3  Lan-Let-7  Lgi-Let-7  Lhy-Let-7  Llo-Let-7  Loc-Let-7-P2b3  Mal-Let-7-P2b3a  Mgi-Let-7  Mml-Let-7-P2b3  Mmr-Let-7-P2b3  Mmu-Let-7-P2b3  Mom-Let-7  Mun-Let-7-P2b3  Npo-Let-7  Oan-Let-7-P2b3  Obi-Let-7  Ocu-Let-7-P2b3  Ofu-Let-7  Ovu-Let-7  Pab-Let-7-P2b3  Pau-Let-7  Pbv-Let-7-P2b3  Pca-Let-7  Pcr-Let-7  Pdu-Let-7  Pfl-Let-7  Ple-Let-7  Pmi-Let-7  Pve-Let-7  Rno-Let-7-P2b3  Rph-Let-7  Sko-Let-7  Sma-Let-7  Sne-Let-7  Snu-Let-7  Spt-Let-7-P2b3  Spu-Let-7  Sro-Let-7  Sto-Let-7-P2b3  Tca-Let-7  Tni-Let-7-P2b3a  Tni-Let-7-P2b3b  Tur-Let-7  War-Let-7  Xbo-Let-7  Xla-Let-7-P2b3c  Xla-Let-7-P2b3d  Xtr-Let-7-P2b3 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_2027: 22988-23070 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P2b3b)		 Let-7-P2b3b GeneScaffold_2027: 22988-23070 [-] UCSC Ensembl
Let-7-P2a3b GeneScaffold_2027: 23474-23544 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCCCUGUGUUUGUCUUCUCUGCACUGUGGUGAGGUAGUAAGUUGUGUUGUUGUGGGGUGUGGGAUAUCACCGCCCCAUUUAGGAGAUGCAACUAUACAACUUACUGCCUUCCACAUGGUAGCACUUUACAUCCUUUAUUGAU
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Structure
        10          20        30        40        50        60        70 
UCCCCUGUGUUUGUCUUCU--|   AC     U                 U   GUGGGGUGUGGGAUAUCA 
                     CUGC  UGUGG GAGGUAGUAAGUUGUGU GUU                  C
                     GAUG  ACACC UUCCGUCAUUCAACAUA CAA                  C
UAGUUAUUUCCUACAUUUCAC^   GU     -                 U   CGUAGAGGAUUUACCCCG 
 140       130       120        110       100        90        80
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Let-7-P2b3b_5p
mirBase accessionMIMAT0044165
Sequence 
0- UGAGGUAGUAAGUUGUGUUGUU -22
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Star sequence

Gmo-Let-7-P2b3b_3p*
mirBase accessionMIMAT0044166
Sequence 
62- CUAUACAACUUACUGCCUUCC -83
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