MirGeneDB 2.1
MirGeneDB ID

Gmo-Let-7-P1c2

Family name LET-7 (all species)
Seed GAGGUAG
Species Cod (Gadus morhua)
MiRBase ID gmo-let-7c
Paralogues Gmo-Let-7-P1b1  Gmo-Let-7-P1b2  Gmo-Let-7-P1d1  Gmo-Let-7-P1d2  Gmo-Let-7-P2a1a  Gmo-Let-7-P2a2a  Gmo-Let-7-P2a3a  Gmo-Let-7-P2a3b  Gmo-Let-7-P2a4a  Gmo-Let-7-P2a4b  Gmo-Let-7-P2b1a  Gmo-Let-7-P2b2a  Gmo-Let-7-P2b3a  Gmo-Let-7-P2b3b  Gmo-Let-7-P2b4a  Gmo-Let-7-P2b4b  Gmo-Let-7-P2c2a  Gmo-Let-7-P2c2b  Gmo-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P1c  Ami-Let-7-P1c  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P1c  Cfa-Let-7-P1c  Cgi-Let-7  Cin-Let-7-P1  Cli-Let-7-P1c  Cpi-Let-7-P1c  Cpo-Let-7-P1c  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P1c  Dpu-Let-7  Dre-Let-7-P1c2  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P1c  Gga-Let-7-P1c  Gja-Let-7-P1c  Hme-Let-7  Hsa-Let-7-P1c  Isc-Let-7  Lan-Let-7  Lch-Let-7-P1c  Lgi-Let-7  Loc-Let-7-P1c  Mal-Let-7-P1c2  Mml-Let-7-P1c  Mmu-Let-7-P1c  Mun-Let-7-P1c  Npo-Let-7  Oan-Let-7-P1c  Obi-Let-7  Ocu-Let-7-P1c  Ovu-Let-7  Pbv-Let-7-P1c  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P1c  Sha-Let-7-P1c  Sko-Let-7  Spt-Let-7-P1c  Spu-Let-7  Sto-Let-7-P1c  Tca-Let-7  Tgu-Let-7-P1c  Xbo-Let-7  Xtr-Let-7-P1c 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_4232: 160003-160069 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P1c2)		 Mir-10-P2c2 GeneScaffold_4232: 158911-158969 [+] UCSC Ensembl
Let-7-P1c2 GeneScaffold_4232: 160003-160069 [+] UCSC Ensembl
Mir-10-P3c2 GeneScaffold_4232: 169613-169675 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAAACUUGUGAAAAUGUGUGCAUCCGGGUUGAGGUAGUAGGUUGUAUGGUUUAGAAUUACACCGUGGGAGUUGACUGUACAACCUUCUAGCUUUCCUUGGAGUACACGUACGACAUCAAAGACUUG
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Structure
        10           20        30        40        50        60   
GGAAACUUGUGAAAAUG---|    A      UU   G   U             UAGAAUUACA 
                    UGUGC UCCGGG  GAG UAG AGGUUGUAUGGUU          \
                    ACAUG AGGUUC  UUC AUC UCCAACAUGUCAG          C
GUUCAGAAACUACAGCAUGC^    -      CU   G   U             UUGAGGGUGC 
     120       110        100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Let-7-P1c2_5p
mirBase accessionMIMAT0044271
Sequence 
0- UGAGGUAGUAGGUUGUAUGGUU -22
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Star sequence

Gmo-Let-7-P1c2_3p*
mirBase accessionMIMAT0044272
Sequence 
45- CUGUACAACCUUCUAGCUUUCC -67
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