MirGeneDB 3.0
MirGeneDB ID

Dre-Let-7-P1c2

Family name LET-7 (all species)
Seed GAGGUAG
Species Zebrafish (Danio rerio)
MiRBase ID dre-let-7c-2
Paralogues Dre-Let-7-P1b1  Dre-Let-7-P1b2  Dre-Let-7-P1c1  Dre-Let-7-P1d1  Dre-Let-7-P1d2  Dre-Let-7-P2a1a  Dre-Let-7-P2a2a  Dre-Let-7-P2a2b  Dre-Let-7-P2a3a  Dre-Let-7-P2a3b  Dre-Let-7-P2a4a  Dre-Let-7-P2a4b  Dre-Let-7-P2b1a  Dre-Let-7-P2b2a  Dre-Let-7-P2b2b  Dre-Let-7-P2b3a  Dre-Let-7-P2b4a  Dre-Let-7-P2b4b  Dre-Let-7-P2c2b  Dre-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P1c  Aga-Let-7  Agr-Let-7  Ami-Let-7-P1c  Bge-Let-7  Bko-Let-7  Bpl-Let-7  Bta-Let-7-P1c  Cfa-Let-7-P1c  Cin-Let-7-P1  Cja-Let-7-P1c  Cli-Let-7-P1c  Cpi-Let-7-P1c  Cpo-Let-7-P1c  Cte-Let-7  Dan-Let-7  Dlo-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P1c  Dpu-Let-7  Dsi-Let-7  Dya-Let-7  Eba-Let-7  Eca-Let-7-P1c  Egr-Let-7  Esc-Let-7  Ete-Let-7-P1c  Gga-Let-7-P1c  Gja-Let-7-P1c  Gmo-Let-7-P1c2  Gpa-Let-7  Gsa-Let-7  Gsp-Let-7  Hme-Let-7  Hmi-Let-7  Hru-Let-7  Hsa-Let-7-P1c  Isc-Let-7  Laf-Let-7-P1c  Lan-Let-7  Lch-Let-7-P1c  Lgi-Let-7  Lhy-Let-7  Llo-Let-7  Loc-Let-7-P1c  Mal-Let-7-P1c2  Mgi-Let-7  Mml-Let-7-P1c  Mmr-Let-7-P1c  Mmu-Let-7-P1c  Mom-Let-7  Mun-Let-7-P1c  Neu-Let-7-P1c  Npo-Let-7  Oan-Let-7-P1c  Obi-Let-7  Ocu-Let-7-P1c  Ofu-Let-7  Ovu-Let-7  Pab-Let-7-P1c  Pau-Let-7  Pbv-Let-7-P1c  Pca-Let-7  Pcr-Let-7  Pdu-Let-7  Pfl-Let-7  Ple-Let-7  Pmi-Let-7  Pve-Let-7  Rno-Let-7-P1c  Rph-Let-7  Sha-Let-7-P1c  Sko-Let-7  Sma-Let-7  Sne-Let-7  Snu-Let-7  Spt-Let-7-P1c  Spu-Let-7  Sro-Let-7  Sto-Let-7-P1c  Tca-Let-7  Tgu-Let-7-P1c  Tur-Let-7  War-Let-7  Xbo-Let-7  Xtr-Let-7-P1c 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(danRer11)		 chr10: 38072088-38072154 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P1c2)		 Mir-10-P3c2 chr10: 38051674-38051736 [-] UCSC Ensembl
Let-7-P1c2 chr10: 38072088-38072154 [-] UCSC Ensembl
Mir-10-P2c2 chr10: 38074322-38074380 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAACAGCAUUGUGGACGUGUGCAUCCAGGCUGAGGUAGUAGGUUGUAUGGUUUCGAAUGACACCAUGGGAGUUAACUGUACAACCUUCUAGCUUUCCUUGGAGUACACUCAUUUCAUCAAGGAAGAC
Get precursor sequence
Structure
        10           20        30        40        50        60   
GAACAGCAUUGUGGACG---|    A      CU   G   U             UCGAAUGACA 
                    UGUGC UCCAGG  GAG UAG AGGUUGUAUGGUU          \
                    ACAUG AGGUUC  UUC AUC UCCAACAUGUCAA          C
CAGAAGGAACUACUUUACUC^    -      CU   G   U             UUGAGGGUAC 
     120       110        100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Let-7-P1c2_5p
mirBase accessionMIMAT0001761
Sequence 
0- UGAGGUAGUAGGUUGUAUGGUU -22
Get sequence
Proposed targets TargetScanFish: dre-let-7c
Star sequence

Dre-Let-7-P1c2_3p*
mirBase accessionMIMAT0031930
Sequence 
45- CUGUACAACCUUCUAGCUUUCC -67
Get sequence