MirGeneDB 2.1

MirGeneDB ID

Dre-Let-7-P2a2b

Family name LET-7 (all species)
Seed GAGGUAG
Species Zebrafish (Danio rerio)
MiRBase ID
Paralogues Dre-Let-7-P1b1  Dre-Let-7-P1b2  Dre-Let-7-P1c1  Dre-Let-7-P1c2  Dre-Let-7-P1d1  Dre-Let-7-P1d2  Dre-Let-7-P2a1a  Dre-Let-7-P2a2a  Dre-Let-7-P2a3a  Dre-Let-7-P2a3b  Dre-Let-7-P2a4a  Dre-Let-7-P2a4b  Dre-Let-7-P2b1a  Dre-Let-7-P2b2a  Dre-Let-7-P2b2b  Dre-Let-7-P2b3a  Dre-Let-7-P2b4a  Dre-Let-7-P2b4b  Dre-Let-7-P2c2b  Dre-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2a2  Ami-Let-7-P2a2  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P2a2  Cfa-Let-7-P2a2  Cgi-Let-7  Cli-Let-7-P2a2  Cmi-Let-7-P2a2  Cpi-Let-7-P2a2  Cpo-Let-7-P2a2  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2a2  Dpu-Let-7  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P2a2  Gga-Let-7-P2a2  Gja-Let-7-P2a2  Gmo-Let-7-P2a2a  Hme-Let-7  Hsa-Let-7-P2a2  Isc-Let-7  Lan-Let-7  Lch-Let-7-P2a2  Lgi-Let-7  Loc-Let-7-P2a2  Mal-Let-7-P2a2a  Mal-Let-7-P2a2b  Mdo-Let-7-P2a2  Mml-Let-7-P2a2  Mmu-Let-7-P2a2  Mun-Let-7-P2a2  Npo-Let-7  Oan-Let-7-P2a2  Obi-Let-7  Ocu-Let-7-P2a2  Ovu-Let-7  Pbv-Let-7-P2a2  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P2a2  Sha-Let-7-P2a2  Sko-Let-7  Spt-Let-7-P2a2  Spu-Let-7  Sto-Let-7-P2a2  Tca-Let-7  Tgu-Let-7-P2a2  Tni-Let-7-P2a2a  Tni-Let-7-P2a2b  Xbo-Let-7  Xla-Let-7-P2a2c  Xla-Let-7-P2a2d  Xtr-Let-7-P2a2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(danRer11)
chr25: 2189978-2190049 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCUUCAGCGUUUCCCACUGUCCUUUGGGGUGAGGUAGUAGGUUGUAUAGUUUUAGGGUGACACCCUUCCUGUUAGAUAACUAUACAACUUACUGUCUUUCCUGAAGAGGCUGUAAUAUCACCGCCAUCAAC
Get precursor sequence
Structure
        10          20         30        40        50        60     
GGCUUCAGCGUUUCCCACU--   -|  UG   U   GU                UUAGGGUGACAC 
                     GUC CUU  GGG GAG  AGUAGGUUGUAUAGUU            C
                     CGG GAA  CCU UUC  UCAUUCAACAUAUCAA            C
CAACUACCGCCACUAUAAUGU   A^  GU   -   UG                UAGAUUGUCCUU 
130       120       110       100         90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Let-7-P2a2b_5p

mirBase accessionNone
Sequence
0- UGAGGUAGUAGGUUGUAUAGUU -22
Get sequence
Star sequence

Dre-Let-7-P2a2b_3p*

mirBase accessionNone
Sequence
50- CUAUACAACUUACUGUCUUUCC -72
Get sequence