Let-7-P2a2

MirGeneDB ID

Cfa-Let-7-P2a2

Family name

LET-7 (all species)

Seed

GAGGUAG

Species

Dog (Canis familiaris)

MiRBase ID

cfa-let-7a-1

Paralogues

Cfa-Let-7-P1b Cfa-Let-7-P1c Cfa-Let-7-P1d Cfa-Let-7-P2a1 Cfa-Let-7-P2a3 Cfa-Let-7-P2b1 Cfa-Let-7-P2b2 Cfa-Let-7-P2b3 Cfa-Let-7-P2c1 Cfa-Let-7-P2c2 Cfa-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P2a2 Aga-Let-7 Agr-Let-7 Ami-Let-7-P2a2 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P2a2 Cja-Let-7-P2a2 Cli-Let-7-P2a2 Cmi-Let-7-P2a2 Cpi-Let-7-P2a2 Cpo-Let-7-P2a2 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P2a2 Dpu-Let-7 Dre-Let-7-P2a2a Dre-Let-7-P2a2b Dsi-Let-7 Dya-Let-7 Eba-Let-7 Eca-Let-7-P2a2 Egr-Let-7 Esc-Let-7 Ete-Let-7-P2a2 Gga-Let-7-P2a2 Gja-Let-7-P2a2 Gmo-Let-7-P2a2a Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P2a2 Isc-Let-7 Laf-Let-7-P2a2 Lan-Let-7 Lch-Let-7-P2a2 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P2a2 Mal-Let-7-P2a2a Mal-Let-7-P2a2b Mdo-Let-7-P2a2 Mgi-Let-7 Mml-Let-7-P2a2 Mmr-Let-7-P2a2 Mmu-Let-7-P2a2 Mom-Let-7 Mun-Let-7-P2a2 Neu-Let-7-P2a2 Npo-Let-7 Oan-Let-7-P2a2 Obi-Let-7 Ocu-Let-7-P2a2 Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P2a2 Pau-Let-7 Pbv-Let-7-P2a2 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P2a2 Rph-Let-7 Sha-Let-7-P2a2 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P2a2 Spu-Let-7 Sro-Let-7 Sto-Let-7-P2a2 Tca-Let-7 Tgu-Let-7-P2a2 Tni-Let-7-P2a2a Tni-Let-7-P2a2b Tur-Let-7 War-Let-7 Xbo-Let-7 Xla-Let-7-P2a2c Xla-Let-7-P2a2d Xtr-Let-7-P2a2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(canFam3_add)

chr10: 20034320-20034387 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Let-7-P2a2)

Let-7-P2b2 chr10: 20033392-20033467 [-] UCSC Ensembl
Let-7-P2a2 chr10: 20034320-20034387 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCGUGUGCCAUGACCAACGGCCCUUUGGGGUGAGGUAGUAGGUUGUAUAGUUUGGGGCUCUGCCCUGCUCUGGGUAACUAUACAAUCUACUGUCUUUCCUGAAGUGGCUGUAAUAUCGCCGAUGGACA

Get precursor sequence

Structure

        10         20         30        40        50        60    
CCGUGUGCCAUGACCAA-     -|  UG   U   GU                UGGGGCUCUGC 
                  CGGCC CUU  GGG GAG  AGUAGGUUGUAUAGUU           \
                  GUCGG GAA  CCU UUC  UCAUCUAACAUAUCAA           C
ACAGGUAGCCGCUAUAAU     U^  GU   -   UG                UGGGUCUCGUC 
      120       110       100         90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Let-7-P2a2_5p

mirBase accession

MIMAT0006594

Sequence

0- UGAGGUAGUAGGUUGUAUAGUU -22

Get sequence

Proposed targets

TargetScanVert: cfa-let-7a
miRDB: MIMAT0006594

Star sequence

Cfa-Let-7-P2a2_3p*

mirBase accession

None

Sequence

47- CUAUACAAUCUACUGUCUUUC -68

Get sequence