MirGeneDB 3.0
MirGeneDB ID

Xtr-Let-7-P2a2

Family name LET-7 (all species)
Seed GAGGUAG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-let-7e-2
Paralogues Xtr-Let-7-P1b  Xtr-Let-7-P1c  Xtr-Let-7-P2a1  Xtr-Let-7-P2a3  Xtr-Let-7-P2b2  Xtr-Let-7-P2b3  Xtr-Let-7-P2c2  Xtr-Let-7-P2c3  Xtr-Let-7-P2c4 
Orthologues Aae-Let-7  Aca-Let-7-P2a2  Aga-Let-7  Agr-Let-7  Ami-Let-7-P2a2  Bge-Let-7  Bko-Let-7  Bpl-Let-7  Bta-Let-7-P2a2  Cfa-Let-7-P2a2  Cja-Let-7-P2a2  Cli-Let-7-P2a2  Cmi-Let-7-P2a2  Cpi-Let-7-P2a2  Cpo-Let-7-P2a2  Cte-Let-7  Dan-Let-7  Dlo-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2a2  Dpu-Let-7  Dre-Let-7-P2a2a  Dre-Let-7-P2a2b  Dsi-Let-7  Dya-Let-7  Eba-Let-7  Eca-Let-7-P2a2  Egr-Let-7  Esc-Let-7  Ete-Let-7-P2a2  Gga-Let-7-P2a2  Gja-Let-7-P2a2  Gmo-Let-7-P2a2a  Gpa-Let-7  Gsa-Let-7  Gsp-Let-7  Hme-Let-7  Hmi-Let-7  Hru-Let-7  Hsa-Let-7-P2a2  Isc-Let-7  Laf-Let-7-P2a2  Lan-Let-7  Lch-Let-7-P2a2  Lgi-Let-7  Lhy-Let-7  Llo-Let-7  Loc-Let-7-P2a2  Mal-Let-7-P2a2a  Mal-Let-7-P2a2b  Mdo-Let-7-P2a2  Mgi-Let-7  Mml-Let-7-P2a2  Mmr-Let-7-P2a2  Mmu-Let-7-P2a2  Mom-Let-7  Mun-Let-7-P2a2  Neu-Let-7-P2a2  Npo-Let-7  Oan-Let-7-P2a2  Obi-Let-7  Ocu-Let-7-P2a2  Ofu-Let-7  Ovu-Let-7  Pab-Let-7-P2a2  Pau-Let-7  Pbv-Let-7-P2a2  Pca-Let-7  Pcr-Let-7  Pdu-Let-7  Pfl-Let-7  Ple-Let-7  Pmi-Let-7  Pve-Let-7  Rno-Let-7-P2a2  Rph-Let-7  Sha-Let-7-P2a2  Sko-Let-7  Sma-Let-7  Sne-Let-7  Snu-Let-7  Spt-Let-7-P2a2  Spu-Let-7  Sro-Let-7  Sto-Let-7-P2a2  Tca-Let-7  Tgu-Let-7-P2a2  Tni-Let-7-P2a2a  Tni-Let-7-P2a2b  Tur-Let-7  War-Let-7  Xbo-Let-7  Xla-Let-7-P2a2c  Xla-Let-7-P2a2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)		 ZWK376327_248187494: 423-492 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCCCCCCAGAUUCCGACUGCCCUUUGGGGUGAGGUAGUAGGUUGUUUAGUUGUGGGUUGCACCCUGACGUUUGGAUAACUAUACAAUCUACUGUCUUUCCUGAAGUGGCUGUAAUGUCAUCGUGGGAGC
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Structure
        10         20         30        40        50        60     
GCCCCCCCAGAUUCCGACU-   -|  UG   U   GU          U     GUGGGUUGCACC 
                    GCC CUU  GGG GAG  AGUAGGUUGU UAGUU            \
                    CGG GAA  CCU UUC  UCAUCUAACA AUCAA            C
CGAGGGUGCUACUGUAAUGU   U^  GU   -   UG          U     UAGGUUUGCAGU 
.       120       110       100         90        80        70
Deep sequencing
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CommentNot in assembly but in trace archive.
3' NTU Yes
MotifsUGUG in loop
Tissue expression
-   +
An Br Em Em He Ve
Mature sequence

Xtr-Let-7-P2a2_5p
mirBase accessionMIMAT0003666
Sequence 
0- UGAGGUAGUAGGUUGUUUAGUU -22
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Proposed targets TargetScanVert: xtr-let-7e
Star sequence

Xtr-Let-7-P2a2_3p*
mirBase accessionNone
Sequence 
49- CUAUACAAUCUACUGUCUUUC -70
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