MirGeneDB 2.1

MirGeneDB ID

Xtr-Let-7-P2a1

Family name LET-7 (all species)
Seed GAGGUAG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-let-7e-1
Paralogues Xtr-Let-7-P1b  Xtr-Let-7-P1c  Xtr-Let-7-P2a2  Xtr-Let-7-P2a3  Xtr-Let-7-P2b2  Xtr-Let-7-P2b3  Xtr-Let-7-P2c2  Xtr-Let-7-P2c3  Xtr-Let-7-P2c4 
Orthologues Aae-Let-7  Aca-Let-7-P2a1  Ami-Let-7-P2a1  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P2a1  Cfa-Let-7-P2a1  Cgi-Let-7  Cli-Let-7-P2a1  Cmi-Let-7-P2a1  Cpi-Let-7-P2a1  Cpo-Let-7-P2a1  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2a1  Dpu-Let-7  Dre-Let-7-P2a1a  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P2a1  Gga-Let-7-P2a1  Gja-Let-7-P2a1  Gmo-Let-7-P2a1a  Hme-Let-7  Hsa-Let-7-P2a1  Isc-Let-7  Lan-Let-7  Lch-Let-7-P2a1  Lgi-Let-7  Loc-Let-7-P2a1  Mal-Let-7-P2a1a  Mdo-Let-7-P2a1  Mml-Let-7-P2a1  Mmu-Let-7-P2a1  Mun-Let-7-P2a1  Npo-Let-7  Oan-Let-7-P2a1  Obi-Let-7  Ocu-Let-7-P2a1  Ovu-Let-7  Pbv-Let-7-P2a1  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P2a1  Sha-Let-7-P2a1  Sko-Let-7  Spt-Let-7-P2a1  Spu-Let-7  Sto-Let-7-P2a1  Tca-Let-7  Tgu-Let-7-P2a1  Xbo-Let-7  Xla-Let-7-P2a1c  Xla-Let-7-P2a1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)
AIUY381245_421853568: 410-481 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUGCUCUCUGGCGCCACCGCCCUGUGGGAUGAGGUAGUAGGUUGUUUAGUUAUUGGGCCGCACCCACCAAUGGGAGAGAACUACACAACCUACUGUCUCUCCUAAAGUGGCCGGAAUCUCCUCACGACCAC
Get precursor sequence
Structure
        10         20         30        40        50        60      
GCUGCUCUCUGGCGCCACC-   -| G     U   GU          U     AUUGGGCCGCACC 
                    GCC CU UGGGA GAG  AGUAGGUUGU UAGUU             \
                    CGG GA AUCCU CUC  UCAUCCAACA AUCAA             C
CACCAGCACUCCUCUAAGGC   U^ A     -   UG          C     GAGAGGGUAACCA 
130       120       110        100        90        80        70
Deep sequencing
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CommentNot in assembly but in trace archive.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Em Em Em Em He
Mature sequence

Xtr-Let-7-P2a1_5p

mirBase accessionMIMAT0003666
Sequence
0- UGAGGUAGUAGGUUGUUUAGUU -22
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Proposed targets TargetScanVert: xtr-let-7e
Star sequence

Xtr-Let-7-P2a1_3p*

mirBase accessionNone
Sequence
51- CUACACAACCUACUGUCUCUC -72
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