MirGeneDB 2.1

MirGeneDB ID

Dre-Let-7-P2c3

Family name LET-7 (all species)
Seed GAGGUAG
Species Zebrafish (Danio rerio)
MiRBase ID dre-let-7j
Paralogues Dre-Let-7-P1b1  Dre-Let-7-P1b2  Dre-Let-7-P1c1  Dre-Let-7-P1c2  Dre-Let-7-P1d1  Dre-Let-7-P1d2  Dre-Let-7-P2a1a  Dre-Let-7-P2a2a  Dre-Let-7-P2a2b  Dre-Let-7-P2a3a  Dre-Let-7-P2a3b  Dre-Let-7-P2a4a  Dre-Let-7-P2a4b  Dre-Let-7-P2b1a  Dre-Let-7-P2b2a  Dre-Let-7-P2b2b  Dre-Let-7-P2b3a  Dre-Let-7-P2b4a  Dre-Let-7-P2b4b  Dre-Let-7-P2c2b 
Orthologues Aae-Let-7  Aca-Let-7-P2c3  Ami-Let-7-P2c3  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P2c3  Cfa-Let-7-P2c3  Cgi-Let-7  Cli-Let-7-P2c3  Cmi-Let-7-P2c3  Cpi-Let-7-P2c3  Cpo-Let-7-P2c3  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2c3  Dpu-Let-7  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P2c3  Gga-Let-7-P2c3  Gja-Let-7-P2c3  Gmo-Let-7-P2c3  Hme-Let-7  Hsa-Let-7-P2c3  Isc-Let-7  Lan-Let-7  Lch-Let-7-P2c3  Lgi-Let-7  Loc-Let-7-P2c3  Mal-Let-7-P2c3  Mdo-Let-7-P2c3  Mml-Let-7-P2c3  Mmu-Let-7-P2c3  Mun-Let-7-P2c3  Npo-Let-7  Oan-Let-7-P2c3  Obi-Let-7  Ocu-Let-7-P2c3  Ovu-Let-7  Pbv-Let-7-P2c3  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P2c3  Sha-Let-7-P2c3  Sko-Let-7  Spt-Let-7-P2c3  Spu-Let-7  Sto-Let-7-P2c3  Tca-Let-7  Tgu-Let-7-P2c3  Tni-Let-7-P2c3  Xbo-Let-7  Xla-Let-7-P2c3c  Xla-Let-7-P2c3d  Xtr-Let-7-P2c3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(danRer11)
chr6: 41454794-41454872 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUGGCUGUUUAUCCUUGCCUGUUCUGGGUUGAGGUAGUUGUUUGUACAGUUUUUAGGGUCUGUUAUUCUGCCCUGUUAAGGAGCUAACUGUACAGACUACUGCCUUGCCCAGGGUUGAGCCCACUCAUCUGACAUGGU
Get precursor sequence
Structure
        10         20         30        40        50        60         
UAUGGCUGUUUAUCCUU-  CU-|UU      U        U            UUUAGGGUCUGUUAUU 
                  GC   G  CUGGGU GAGGUAGU GUUUGUACAGUU                C
                  CG   U  GACCCG UUCCGUCA CAGACAUGUCAA                U
UGGUACAGUCUACUCACC  AGU^GG      -        U            UCGAGGAAUUGUCCCG 
       130       120       110        100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Let-7-P2c3_5p

mirBase accessionMIMAT0003015
Sequence
0- UGAGGUAGUUGUUUGUACAGUU -22
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Proposed targets TargetScanFish: dre-let-7j
Star sequence

Dre-Let-7-P2c3_3p*

mirBase accessionNone
Sequence
58- CUGUACAGACUACUGCCUUGC -79
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