MirGeneDB 2.1
MirGeneDB ID

Dre-Let-7-P2a4a

Family name LET-7 (all species)
Seed GAGGUAG
Species Zebrafish (Danio rerio)
MiRBase ID dre-let-7e
Paralogues Dre-Let-7-P1b1  Dre-Let-7-P1b2  Dre-Let-7-P1c1  Dre-Let-7-P1c2  Dre-Let-7-P1d1  Dre-Let-7-P1d2  Dre-Let-7-P2a1a  Dre-Let-7-P2a2a  Dre-Let-7-P2a2b  Dre-Let-7-P2a3a  Dre-Let-7-P2a3b  Dre-Let-7-P2a4b  Dre-Let-7-P2b1a  Dre-Let-7-P2b2a  Dre-Let-7-P2b2b  Dre-Let-7-P2b3a  Dre-Let-7-P2b4a  Dre-Let-7-P2b4b  Dre-Let-7-P2c2b  Dre-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2a4  Ami-Let-7-P2a4  Bge-Let-7  Bpl-Let-7  Cgi-Let-7  Cli-Let-7-P2a4  Cmi-Let-7-P2a4  Cpi-Let-7-P2a4  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dpu-Let-7  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Gga-Let-7-P2a4  Gja-Let-7-P2a4  Gmo-Let-7-P2a4a  Gmo-Let-7-P2a4b  Hme-Let-7  Isc-Let-7  Lan-Let-7  Lch-Let-7-P2a4  Lgi-Let-7  Loc-Let-7-P2a4  Mal-Let-7-P2a4a  Mal-Let-7-P2a4b  Mun-Let-7-P2a4  Npo-Let-7  Oan-Let-7-P2a4  Obi-Let-7  Ovu-Let-7  Pbv-Let-7-P2a4  Pfl-Let-7  Pmi-Let-7  Sko-Let-7  Spt-Let-7-P2a4  Spu-Let-7  Tca-Let-7  Tgu-Let-7-P2a4  Tni-Let-7-P2a4a  Tni-Let-7-P2a4b  Xbo-Let-7 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(danRer11)		 chr23: 5431431-5431503 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P2a4a)		 Let-7-P2b4a chr23: 5431216-5431292 [-] UCSC Ensembl
Let-7-P2a4a chr23: 5431431-5431503 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGUCAGCAUCUGCUCUGCUGUUCUUGGGGCUGAGGUAGUAGAUUGAAUAGUUGUGGAGCCCUGCGCUCUCUCUCUGAGAUAACUAUACAAUCUACUGUCUUUCCUAAGGCGACAGCCAAAUCAUCCGCAAAAC
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Structure
        10         20          30        40        50        60      
GGUCAGCAUCUGCUCUG-     --|      CU   GU         A      GUGGAGCCCUGCG 
                  CUGUU  CUUGGGG  GAG  AGUAGAUUG AUAGUU             C
                  GACAG  GAAUCCU  UUC  UCAUCUAAC UAUCAA             U
CAAAACGCCUACUAAACC     CG^      --   UG         A      UAGAGUCUCUCUC 
 130       120       110         100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsUGUG in loop
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Let-7-P2a4a_5p
mirBase accessionNone
Sequence 
0- UGAGGUAGUAGAUUGAAUAGUU -22
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Star sequence

Dre-Let-7-P2a4a_3p*
mirBase accessionNone
Sequence 
52- CUAUACAAUCUACUGUCUUUC -73
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