MirGeneDB 2.1

MirGeneDB ID

Bta-Let-7-P1c

Family name LET-7 (all species)
Seed GAGGUAG
Species Cow (Bos taurus)
MiRBase ID bta-let-7c
Paralogues Bta-Let-7-P1b  Bta-Let-7-P1d  Bta-Let-7-P2a1  Bta-Let-7-P2a2  Bta-Let-7-P2a3  Bta-Let-7-P2b1  Bta-Let-7-P2b2  Bta-Let-7-P2b3  Bta-Let-7-P2c1  Bta-Let-7-P2c2  Bta-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P1c  Ami-Let-7-P1c  Bge-Let-7  Bpl-Let-7  Cfa-Let-7-P1c  Cgi-Let-7  Cin-Let-7-P1  Cli-Let-7-P1c  Cpi-Let-7-P1c  Cpo-Let-7-P1c  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P1c  Dpu-Let-7  Dre-Let-7-P1c1  Dre-Let-7-P1c2  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P1c  Gga-Let-7-P1c  Gja-Let-7-P1c  Gmo-Let-7-P1c2  Hme-Let-7  Hsa-Let-7-P1c  Isc-Let-7  Lan-Let-7  Lch-Let-7-P1c  Lgi-Let-7  Loc-Let-7-P1c  Mal-Let-7-P1c2  Mml-Let-7-P1c  Mmu-Let-7-P1c  Mun-Let-7-P1c  Npo-Let-7  Oan-Let-7-P1c  Obi-Let-7  Ocu-Let-7-P1c  Ovu-Let-7  Pbv-Let-7-P1c  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P1c  Sha-Let-7-P1c  Sko-Let-7  Spt-Let-7-P1c  Spu-Let-7  Sto-Let-7-P1c  Tca-Let-7  Tgu-Let-7-P1c  Xbo-Let-7  Xla-Let-7-P1c3  Xla-Let-7-P1c4  Xtr-Let-7-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037328.1: 20434624-20434690 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P1c)
Mir-10-P3c NC_037328.1: 20385513-20385573 [-] UCSC Ensembl
Let-7-P1c NC_037328.1: 20434624-20434690 [-] UCSC Ensembl
Mir-10-P2c NC_037328.1: 20435353-20435411 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCAACACUGGAAGCUGUGUGCAUCCGGGUUGAGGUAGUAGGUUGUAUGGUUUAGAGUUACACCCUGGGAGUUAACUGUACAACCUUCUAGCUUUCCUUGGAGCACACUUGAGCCAUCGAGGAAUUC
Get precursor sequence
Structure
        10           20        30        40        50        60   
AGCAACACUGGAAGCUG---|    A      UU   G   U             UAGAGUUACA 
                    UGUGC UCCGGG  GAG UAG AGGUUGUAUGGUU          \
                    ACACG AGGUUC  UUC AUC UCCAACAUGUCAA          C
CUUAAGGAGCUACCGAGUUC^    -      CU   G   U             UUGAGGGUCC 
     120       110        100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Cd Fe Bo Br Ce Co Co De He Hy Ir Ki La Lo No Op Or Pe Re Su Te
Mature sequence

Bta-Let-7-P1c_5p

mirBase accessionMIMAT0004332
Sequence
0- UGAGGUAGUAGGUUGUAUGGUU -22
Get sequence
Proposed targets TargetScanVert: bta-let-7c
Star sequence

Bta-Let-7-P1c_3p*

mirBase accessionNone
Sequence
45- CUGUACAACCUUCUAGCUUUCC -67
Get sequence