Mir-10-P2c2

MirGeneDB ID

Gmo-Mir-10-P2c2

Family name

MIR-10 (all species)

Seed

ACCCGUA

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-99

Paralogues

Gmo-Mir-10-P1b1-v1 Gmo-Mir-10-P1b1-v2 Gmo-Mir-10-P1b2-v1 Gmo-Mir-10-P1b2-v2 Gmo-Mir-10-P1c1-v1 Gmo-Mir-10-P1c1-v2 Gmo-Mir-10-P1c2-v1 Gmo-Mir-10-P1c2-v2 Gmo-Mir-10-P1d1-v1 Gmo-Mir-10-P1d1-v2 Gmo-Mir-10-P2d1 Gmo-Mir-10-P2d2 Gmo-Mir-10-P3b1 Gmo-Mir-10-P3b2 Gmo-Mir-10-P3c2 Gmo-Mir-10-P3d1 Gmo-Mir-10-P3d2

Orthologues

Aae-Mir-10-P2 Aca-Mir-10-P2c Adi-Mir-10 Aga-Mir-10-P2 Agr-Mir-10-P2 Ami-Mir-10-P2c Asp-Mir-10 Bfl-Mir-10-P2-v1 Bfl-Mir-10-P2-v2 Bge-Mir-10-P2 Bko-Mir-10-P2 Bla-Mir-10-P2-v1 Bla-Mir-10-P2-v2 Bpl-Mir-10-P2 Bta-Mir-10-P2c Cbr-Mir-10-P2 Cel-Mir-10-P2 Cfa-Mir-10-P2c Cin-Mir-10-P2 Cja-Mir-10-P2c Cli-Mir-10-P2c Cmi-Mir-10-P2c Cpi-Mir-10-P2c Cpo-Mir-10-P2c Cte-Mir-10-P2 Dan-Mir-10-P2 Dgr-Mir-10-P2 Dlo-Mir-10-P2 Dma-Mir-10-P2 Dme-Mir-10-P2 Dmo-Mir-10-P2 Dno-Mir-10-P2c Dpu-Mir-10-P2 Dre-Mir-10-P2c2 Dsi-Mir-10-P2 Dya-Mir-10-P2 Eba-Mir-10-P2 Eca-Mir-10-P2c Ete-Mir-10-P2c Gga-Mir-10-P2c Gja-Mir-10-P2c Gpa-Mir-10-P2 Gsp-Mir-10-P2 Hru-Mir-10-P2 Hsa-Mir-10-P2c Isc-Mir-10-P2 Laf-Mir-10-P2c Lan-Mir-10-P2 Lch-Mir-10-P2c Lgi-Mir-10-P2 Lhy-Mir-10-P2 Llo-Mir-10-P2 Loc-Mir-10-P2c Mal-Mir-10-P2c2 Mgi-Mir-10-P2 Mml-Mir-10-P2c Mmr-Mir-10-P2c Mmu-Mir-10-P2c Mom-Mir-10-P2 Mun-Mir-10-P2c Neu-Mir-10-P2c Npo-Mir-10-P2 Nve-Mir-10 Oan-Mir-10-P2c Obi-Mir-10-P2 Ocu-Mir-10-P2c Ofu-Mir-10-P2 Ovu-Mir-10-P2 Pab-Mir-10-P2c Pau-Mir-10-P2 Pbv-Mir-10-P2c Pca-Mir-10-P2 Pdu-Mir-10-P2 Pfl-Mir-10-P2 Ple-Mir-10-P2 Pmi-Mir-10-P2 Pve-Mir-10-P2 Rno-Mir-10-P2c Rph-Mir-10-P2 Sha-Mir-10-P2c Sko-Mir-10-P2 Snu-Mir-10-P2 Spt-Mir-10-P2c Sto-Mir-10-P2c Tca-Mir-10-P2 Tgu-Mir-10-P2c Tur-Mir-10-P2 Xbo-Mir-10-P2 Xbo-Mir-10-P2-as Xtr-Mir-10-P2c

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Eumetazoa

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_4232: 158911-158969 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P2c2)

Mir-10-P2c2 GeneScaffold_4232: 158911-158969 [+] UCSC Ensembl
Let-7-P1c2 GeneScaffold_4232: 160003-160069 [+] UCSC Ensembl
Mir-10-P3c2 GeneScaffold_4232: 169613-169675 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUACCAUUUGCUAUUUAACCAUUUGACACAAACCCGUAGAUCCGAUCUUGUGGCAAAUAUGACAGCACAAGUUCGCUUCUGCAGGUCUCUGUCAUCCUGGUGUGAACUUCGUCAAACUG

Get precursor sequence

Structure

        10         20         30        40        50         
AUACCAUUUGCUAUUUA-    UU-|    CAA   C     UC   U      GCAAAU 
                  ACCA   UGACA   ACC GUAGA  CGA CUUGUG      \
                  UGGU   ACUGU   UGG CGUCU  GCU GAACAC      A
GUCAAACUGCUUCAAGUG    CCU^    CUC   A     UC   U      GACAGU 
       110       100        90        80        70        60

Deep sequencing

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Comment

Based on the 3' DcRNA reads in human (P2b) and platypus (P2c) it appears that this is a Group 2 miRNA.

3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Mature sequence

Gmo-Mir-10-P2c2_5p

mirBase accession

MIMAT0044269

Sequence

0- AACCCGUAGAUCCGAUCUUGUG -22

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Star sequence

Gmo-Mir-10-P2c2_3p*

mirBase accession

MIMAT0044270

Sequence

37- CAAGUUCGCUUCUGCAGGUCUC -59

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