MirGeneDB 2.1

MirGeneDB ID

Xbo-Mir-10-P2

Family name

MIR-10 (all species)

Seed

Species

Xenoturbella (Xenoturbella bocki)

MiRBase ID

Paralogues

Xbo-Mir-10-P2-as Xbo-Mir-10-P3

Orthologues

Aae-Mir-10-P2 Aca-Mir-10-P2b Aca-Mir-10-P2c Aca-Mir-10-P2d Ami-Mir-10-P2b Ami-Mir-10-P2c Ami-Mir-10-P2d Asu-Mir-10-P2o3 Asu-Mir-10-P2o4 Asu-Mir-10-P2o5 Asu-Mir-10-P2o6 Asu-Mir-10-P2o7 Asu-Mir-10-P2o8 Bfl-Mir-10-P2-v1 Bfl-Mir-10-P2-v2 Bge-Mir-10-P2 Bla-Mir-10-P2-v1 Bla-Mir-10-P2-v2 Bpl-Mir-10-P2 Bta-Mir-10-P2b Bta-Mir-10-P2c Bta-Mir-10-P2d Cbr-Mir-10-P2 Cel-Mir-10-P2 Cfa-Mir-10-P2b Cfa-Mir-10-P2c Cfa-Mir-10-P2d Cgi-Mir-10-P2 Cin-Mir-10-P2 Cli-Mir-10-P2c Cli-Mir-10-P2d Cmi-Mir-10-P2c Cmi-Mir-10-P2d Cpi-Mir-10-P2b Cpi-Mir-10-P2c Cpi-Mir-10-P2d Cpo-Mir-10-P2b Cpo-Mir-10-P2c Cpo-Mir-10-P2d Csc-Mir-10-P2r1 Csc-Mir-10-P2r2 Cte-Mir-10-P2 Dan-Mir-10-P2 Dma-Mir-10-P2 Dme-Mir-10-P2 Dmo-Mir-10-P2 Dno-Mir-10-P2c Dno-Mir-10-P2d Dpu-Mir-10-P2 Dre-Mir-10-P2c1 Dre-Mir-10-P2c2 Dre-Mir-10-P2d1 Dre-Mir-10-P2d2 Dsi-Mir-10-P2 Dya-Mir-10-P2 Ebu-Mir-10-P2e Ebu-Mir-10-P2f Efe-Mir-10-P2g Efe-Mir-10-P2h Efe-Mir-10-P2i Efe-Mir-10-P2j Efe-Mir-10-P2k Ete-Mir-10-P2b Ete-Mir-10-P2c Ete-Mir-10-P2d Gga-Mir-10-P2c Gga-Mir-10-P2d Gja-Mir-10-P2b Gja-Mir-10-P2c Gja-Mir-10-P2d Gmo-Mir-10-P2c2 Gmo-Mir-10-P2d1 Gmo-Mir-10-P2d2 Hsa-Mir-10-P2b Hsa-Mir-10-P2c Hsa-Mir-10-P2d Isc-Mir-10-P2 Lan-Mir-10-P2 Lch-Mir-10-P2b Lch-Mir-10-P2c Lch-Mir-10-P2d Lgi-Mir-10-P2 Loc-Mir-10-P2c Loc-Mir-10-P2d Lpo-Mir-10-P2o Lpo-Mir-10-P2p Lpo-Mir-10-P2q Mal-Mir-10-P2c2 Mal-Mir-10-P2d1 Mal-Mir-10-P2d2 Mdo-Mir-10-P2d Mml-Mir-10-P2b Mml-Mir-10-P2c Mml-Mir-10-P2d Mmu-Mir-10-P2b Mmu-Mir-10-P2c Mmu-Mir-10-P2d Mun-Mir-10-P2b Mun-Mir-10-P2c Mun-Mir-10-P2d Npo-Mir-10-P2 Nve-Mir-10 Oan-Mir-10-P2b Oan-Mir-10-P2c Oan-Mir-10-P2d Obi-Mir-10-P2 Ocu-Mir-10-P2b Ocu-Mir-10-P2c Ocu-Mir-10-P2d Ovu-Mir-10-P2 Pbv-Mir-10-P2b Pbv-Mir-10-P2c Pbv-Mir-10-P2d Pfl-Mir-10-P2 Pma-Mir-10-P2o1 Pma-Mir-10-P2o2 Pmi-Mir-10-P2 Rno-Mir-10-P2b Rno-Mir-10-P2c Rno-Mir-10-P2d Sha-Mir-10-P2b Sha-Mir-10-P2c Sha-Mir-10-P2d Sko-Mir-10-P2 Spt-Mir-10-P2b Spt-Mir-10-P2c Spt-Mir-10-P2d Spu-Mir-10-P2m Spu-Mir-10-P2n Sto-Mir-10-P2b Sto-Mir-10-P2c Sto-Mir-10-P2d Tca-Mir-10-P2 Tgu-Mir-10-P2c Tgu-Mir-10-P2d Tni-Mir-10-P2d1 Tni-Mir-10-P2d2 Xla-Mir-10-P2b1 Xla-Mir-10-P2b2 Xla-Mir-10-P2c3 Xla-Mir-10-P2c4 Xtr-Mir-10-P2b Xtr-Mir-10-P2c

Node of Origin (locus)

X. bocki

Node of Origin (family)

Eumetazoa

Genome context
(Xbocki_plus)

3C-assembly_contig_1897: 2779703-2779761 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAGCCCGCCGGUUCGUAUCUGAUCACCUUGUACCCGUAGGUCCGAGCUUGUGACACCACGGAUAUCACAAACUCGGUUCUAAGGGUCCAUGAUGUCAGACUGAGUCACGUCUCGAAGAU

Get precursor sequence

Structure

        10           20        30        40        50         
UAGCCCGCCGGUUCGUA---|     CACCU  U    G   GU     C     ACACCA 
                    UCUGAU     UG ACCC UAG  CCGAG UUGUG      \
                    AGACUG     AC UGGG AUC  GGCUC AACAC      C
UAGAAGCUCUGCACUGAGUC^     UAGU-  C    A   UU     A     UAUAGG 
       110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

No

Tissue expression

-

+

To	To	To

Mature sequence

Xbo-Mir-10-P2_5p

mirBase accession

None

Sequence

0- UACCCGUAGGUCCGAGCUUGUG -22

Get sequence

Star sequence

Xbo-Mir-10-P2_3p*

mirBase accession

None

Sequence

37- CAAACUCGGUUCUAAGGGUCCA -59

Get sequence