Mir-10-P2f

MirGeneDB ID

Ebu-Mir-10-P2f

Family name

MIR-10 (all species)

Seed

ACCCGUA

Species

Inshore hagfish (Eptatretus burgeri)

MiRBase ID

Paralogues

Ebu-Mir-10-P1e Ebu-Mir-10-P1f Ebu-Mir-10-P2e Ebu-Mir-10-P3e Ebu-Mir-10-P3f

Orthologues

Aae-Mir-10-P2 Adi-Mir-10 Aga-Mir-10-P2 Agr-Mir-10-P2 Asp-Mir-10 Bfl-Mir-10-P2-v1 Bfl-Mir-10-P2-v2 Bge-Mir-10-P2 Bko-Mir-10-P2 Bla-Mir-10-P2-v1 Bla-Mir-10-P2-v2 Bpl-Mir-10-P2 Cbr-Mir-10-P2 Cel-Mir-10-P2 Cin-Mir-10-P2 Cte-Mir-10-P2 Dan-Mir-10-P2 Dgr-Mir-10-P2 Dlo-Mir-10-P2 Dma-Mir-10-P2 Dme-Mir-10-P2 Dmo-Mir-10-P2 Dpu-Mir-10-P2 Dsi-Mir-10-P2 Dya-Mir-10-P2 Eba-Mir-10-P2 Gpa-Mir-10-P2 Gsp-Mir-10-P2 Hru-Mir-10-P2 Isc-Mir-10-P2 Lan-Mir-10-P2 Lgi-Mir-10-P2 Lhy-Mir-10-P2 Llo-Mir-10-P2 Mgi-Mir-10-P2 Mom-Mir-10-P2 Npo-Mir-10-P2 Nve-Mir-10 Obi-Mir-10-P2 Ofu-Mir-10-P2 Ovu-Mir-10-P2 Pau-Mir-10-P2 Pca-Mir-10-P2 Pdu-Mir-10-P2 Pfl-Mir-10-P2 Ple-Mir-10-P2 Pmi-Mir-10-P2 Pve-Mir-10-P2 Rph-Mir-10-P2 Sko-Mir-10-P2 Snu-Mir-10-P2 Tca-Mir-10-P2 Tur-Mir-10-P2 Xbo-Mir-10-P2 Xbo-Mir-10-P2-as

Node of Origin (locus)

E. burgeri

Node of Origin (family)

Eumetazoa

Genome context
(Eburgeri_3)

FYBX02010565.1: 1875678-1875735 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGCUGGUUCCAGUCUUCGCUGGCCGCCAUAAACCCGUAGAUCCGAACUUGUGGGGCUAUUAAAGCACAAGCUCGGAUCUGCAGGCAUCUGUCGGCUUGGCCAAGCUCUUCAGCCACUC

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Structure

        10         20         30        40        50        
AGCUGGUUCCAGUCUUC-   -|    C  UAAA  C          A      GGGCU 
                  GCU GGCCG CA    CC GUAGAUCCGA CUUGUG     A
                  CGG UCGGC GU    GG CGUCUAGGCU GAACAC     U
CUCACCGACUUCUCGAAC   U^    U  CUAC  A          C      GAAAU 
      110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

Tissue expression

To

Mature sequence

Ebu-Mir-10-P2f_5p

mirBase accession

None

Sequence

0- AACCCGUAGAUCCGAACUUGUG -22

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Star sequence

Ebu-Mir-10-P2f_3p*

mirBase accession

None

Sequence

36- CAAGCUCGGAUCUGCAGGCAUC -58

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