MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-10-P2

Family name MIR-10 (all species)
Seed CAAGCUC
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-1473
Paralogues Cin-Mir-10-P3 
Orthologues Aae-Mir-10-P2  Aca-Mir-10-P2b  Aca-Mir-10-P2c  Aca-Mir-10-P2d  Adi-Mir-10  Aga-Mir-10-P2  Agr-Mir-10-P2  Ami-Mir-10-P2b  Ami-Mir-10-P2c  Ami-Mir-10-P2d  Asp-Mir-10  Asu-Mir-10-P2o3  Asu-Mir-10-P2o4  Asu-Mir-10-P2o5  Asu-Mir-10-P2o6  Asu-Mir-10-P2o7  Asu-Mir-10-P2o8  Bfl-Mir-10-P2-v1  Bfl-Mir-10-P2-v2  Bge-Mir-10-P2  Bko-Mir-10-P2  Bla-Mir-10-P2-v1  Bla-Mir-10-P2-v2  Bpl-Mir-10-P2  Bta-Mir-10-P2b  Bta-Mir-10-P2c  Bta-Mir-10-P2d  Cbr-Mir-10-P2  Cel-Mir-10-P2  Cfa-Mir-10-P2b  Cfa-Mir-10-P2c  Cfa-Mir-10-P2d  Cja-Mir-10-P2b  Cja-Mir-10-P2c  Cja-Mir-10-P2d  Cli-Mir-10-P2c  Cli-Mir-10-P2d  Cmi-Mir-10-P2c  Cmi-Mir-10-P2d  Cpi-Mir-10-P2b  Cpi-Mir-10-P2c  Cpi-Mir-10-P2d  Cpo-Mir-10-P2b  Cpo-Mir-10-P2c  Cpo-Mir-10-P2d  Csc-Mir-10-P2r1  Csc-Mir-10-P2r2  Cte-Mir-10-P2  Dan-Mir-10-P2  Dgr-Mir-10-P2  Dlo-Mir-10-P2  Dma-Mir-10-P2  Dme-Mir-10-P2  Dmo-Mir-10-P2  Dno-Mir-10-P2c  Dno-Mir-10-P2d  Dpu-Mir-10-P2  Dre-Mir-10-P2c1  Dre-Mir-10-P2c2  Dre-Mir-10-P2d1  Dre-Mir-10-P2d2  Dsi-Mir-10-P2  Dya-Mir-10-P2  Eba-Mir-10-P2  Ebu-Mir-10-P2e  Ebu-Mir-10-P2f  Eca-Mir-10-P2b  Eca-Mir-10-P2c  Eca-Mir-10-P2d  Efe-Mir-10-P2g  Efe-Mir-10-P2h  Efe-Mir-10-P2i  Efe-Mir-10-P2j  Efe-Mir-10-P2k  Ete-Mir-10-P2b  Ete-Mir-10-P2c  Ete-Mir-10-P2d  Gga-Mir-10-P2c  Gga-Mir-10-P2d  Gja-Mir-10-P2b  Gja-Mir-10-P2c  Gja-Mir-10-P2d  Gmo-Mir-10-P2c2  Gmo-Mir-10-P2d1  Gmo-Mir-10-P2d2  Gpa-Mir-10-P2  Gsp-Mir-10-P2  Hru-Mir-10-P2  Hsa-Mir-10-P2b  Hsa-Mir-10-P2c  Hsa-Mir-10-P2d  Isc-Mir-10-P2  Laf-Mir-10-P2b  Laf-Mir-10-P2c  Laf-Mir-10-P2d  Lan-Mir-10-P2  Lch-Mir-10-P2b  Lch-Mir-10-P2c  Lch-Mir-10-P2d  Lgi-Mir-10-P2  Lhy-Mir-10-P2  Llo-Mir-10-P2  Loc-Mir-10-P2c  Loc-Mir-10-P2d  Lpo-Mir-10-P2o  Lpo-Mir-10-P2p  Lpo-Mir-10-P2q  Mal-Mir-10-P2c2  Mal-Mir-10-P2d1  Mal-Mir-10-P2d2  Mdo-Mir-10-P2d  Mgi-Mir-10-P2  Mml-Mir-10-P2b  Mml-Mir-10-P2c  Mml-Mir-10-P2d  Mmr-Mir-10-P2b  Mmr-Mir-10-P2c  Mmr-Mir-10-P2d  Mmu-Mir-10-P2b  Mmu-Mir-10-P2c  Mmu-Mir-10-P2d  Mom-Mir-10-P2  Mun-Mir-10-P2b  Mun-Mir-10-P2c  Mun-Mir-10-P2d  Neu-Mir-10-P2b  Neu-Mir-10-P2c  Neu-Mir-10-P2d  Npo-Mir-10-P2  Nve-Mir-10  Oan-Mir-10-P2b  Oan-Mir-10-P2c  Oan-Mir-10-P2d  Obi-Mir-10-P2  Ocu-Mir-10-P2b  Ocu-Mir-10-P2c  Ocu-Mir-10-P2d  Ofu-Mir-10-P2  Ovu-Mir-10-P2  Pab-Mir-10-P2b  Pab-Mir-10-P2c  Pab-Mir-10-P2d  Pau-Mir-10-P2  Pbv-Mir-10-P2b  Pbv-Mir-10-P2c  Pbv-Mir-10-P2d  Pca-Mir-10-P2  Pdu-Mir-10-P2  Pfl-Mir-10-P2  Ple-Mir-10-P2  Pma-Mir-10-P2o1  Pma-Mir-10-P2o2  Pmi-Mir-10-P2  Pve-Mir-10-P2  Rno-Mir-10-P2b  Rno-Mir-10-P2c  Rno-Mir-10-P2d  Rph-Mir-10-P2  Sha-Mir-10-P2b  Sha-Mir-10-P2c  Sha-Mir-10-P2d  Sko-Mir-10-P2  Snu-Mir-10-P2  Spt-Mir-10-P2b  Spt-Mir-10-P2c  Spt-Mir-10-P2d  Spu-Mir-10-P2m  Spu-Mir-10-P2n  Sto-Mir-10-P2b  Sto-Mir-10-P2c  Sto-Mir-10-P2d  Tca-Mir-10-P2  Tgu-Mir-10-P2c  Tgu-Mir-10-P2d  Tni-Mir-10-P2d1  Tni-Mir-10-P2d2  Tur-Mir-10-P2  War-Mir-10-P2s  War-Mir-10-P2t  Xbo-Mir-10-P2  Xbo-Mir-10-P2-as  Xla-Mir-10-P2b1  Xla-Mir-10-P2b2  Xla-Mir-10-P2c3  Xla-Mir-10-P2c4  Xtr-Mir-10-P2b  Xtr-Mir-10-P2c 
Node of Origin (locus) Bilateria
Node of Origin (family) Eumetazoa
Genome context
(ci3)		 10: 1023005-1023063 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P2)		 Mir-10-P3 10: 1022411-1022462 [-] UCSC Ensembl
Let-7-P1 10: 1022546-1022607 [-] UCSC Ensembl
Mir-10-P2 10: 1023005-1023063 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUACCAGGCACAACAUAGCGCGGCUCUGGCACCCACGUAUUCGAUCUUGCGAGAGAUAAAGGACAUCUCAAGCUCGGGUUUAUGGGUGUUGGACCAAGCGGUAGAGCACCUGGAUGAAG
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Structure
        10           20        30        40        50         
AUACCAGGCACAACAUA---| GC  C  UG       CGU      U    C  GAGAUA 
                    GC  GG UC  GCACCCA   AUUCGA CUUG GA      \
                    CG  CC AG  UGUGGGU   UGGGCU GAAC CU      A
GAAGUAGGUCCACGAGAUGG^ AA  -  GU       AUU      C    U  ACAGGA 
       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
C- C- C- C- C- C- C- C- C- C- Ga La La
Star sequence

Cin-Mir-10-P2_5p*
mirBase accessionMIMAT0015245
Sequence 
0- ACCCACGUAUUCGAUCUUGCGA -22
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Mature sequence

Cin-Mir-10-P2_3p
mirBase accessionMIMAT0006067
Sequence 
37- UCAAGCUCGGGUUUAUGGGUGU -59
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