MirGeneDB 3.0
MirGeneDB ID

Asu-Mir-10-P2o8

Family name MIR-10 (all species)
Seed ACCUGAG
Species Large roundworm (Ascaris suum)
MiRBase ID asu-mir-100e
Paralogues Asu-Mir-10-P1  Asu-Mir-10-P2o3  Asu-Mir-10-P2o4  Asu-Mir-10-P2o5  Asu-Mir-10-P2o6  Asu-Mir-10-P2o7  Asu-Mir-10-P3  Asu-Mir-10-P4 
Orthologues Aae-Mir-10-P2  Adi-Mir-10  Aga-Mir-10-P2  Agr-Mir-10-P2  Asp-Mir-10  Bfl-Mir-10-P2-v1  Bfl-Mir-10-P2-v2  Bge-Mir-10-P2  Bko-Mir-10-P2  Bla-Mir-10-P2-v1  Bla-Mir-10-P2-v2  Bpl-Mir-10-P2  Cbr-Mir-10-P2  Cel-Mir-10-P2  Cin-Mir-10-P2  Cte-Mir-10-P2  Dan-Mir-10-P2  Dgr-Mir-10-P2  Dlo-Mir-10-P2  Dma-Mir-10-P2  Dme-Mir-10-P2  Dmo-Mir-10-P2  Dpu-Mir-10-P2  Dsi-Mir-10-P2  Dya-Mir-10-P2  Eba-Mir-10-P2  Gpa-Mir-10-P2  Gsp-Mir-10-P2  Hru-Mir-10-P2  Isc-Mir-10-P2  Lan-Mir-10-P2  Lgi-Mir-10-P2  Lhy-Mir-10-P2  Llo-Mir-10-P2  Lpo-Mir-10-P2o  Mgi-Mir-10-P2  Mom-Mir-10-P2  Npo-Mir-10-P2  Nve-Mir-10  Obi-Mir-10-P2  Ofu-Mir-10-P2  Ovu-Mir-10-P2  Pau-Mir-10-P2  Pca-Mir-10-P2  Pdu-Mir-10-P2  Pfl-Mir-10-P2  Ple-Mir-10-P2  Pmi-Mir-10-P2  Pve-Mir-10-P2  Rph-Mir-10-P2  Sko-Mir-10-P2  Snu-Mir-10-P2  Tca-Mir-10-P2  Tur-Mir-10-P2  Xbo-Mir-10-P2  Xbo-Mir-10-P2-as 
Node of Origin (locus) A.suum
Node of Origin (family) Eumetazoa
Genome context
(ASU_PRJNA80881_plustraces)		 Scaffold68: 233217-233273 [-]
Clustered miRNAs
(< 50kb from Mir-10-P2o8)		 Mir-10-P2o8 Scaffold68: 233217-233273 [-]
Mir-5345 Scaffold68: 235543-235601 [+]
Precursor
(pre-Mir +30nt flank)
UUGUUUGUCUGGAUUGUGGUGUGUGCGGUGAACCUGAGGACCGUAUGCUGUGUUUGGAUAGGUAACACGCAACGGUGUUCGGGUCCACUAAAGCAUCCAAACUCAUCCUCGACCGUA
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Structure
        10          20         30        40        50         
UUGUUUGUCUGGAUUGU--| U    GC-    A       G     A   U     UGGA 
                   GG GUGU   GGUG ACCUGAG ACCGU UGC GUGUU    \
                   CC UACG   UCAC UGGGCUU UGGCA ACG CACAA    U
AUGCCAGCUCCUACUCAAA^ -    AAA    C       G     -   -     UGGA 
     110       100         90        80         70         60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ce Em Em Em Em Em Em Em Em Em Em La Ov Se Sp Te Zy
Mature sequence

Asu-Mir-10-P2o8_5p
mirBase accessionMIMAT0021542
Sequence 
0- AACCUGAGGACCGUAUGCUGUGUU -24
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Star sequence

Asu-Mir-10-P2o8_3p* (predicted)
mirBase accessionMIMAT0021543
Sequence 
35- CACGCAACGGUGUUCGGGUCCA -57
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