Mir-10-P2o4

MirGeneDB ID

Asu-Mir-10-P2o4

Family name

MIR-10 (all species)

Seed

ACCCGUA

Species

Large roundworm (Ascaris suum)

MiRBase ID

asu-mir-100c

Paralogues

Asu-Mir-10-P1 Asu-Mir-10-P2o3 Asu-Mir-10-P2o5 Asu-Mir-10-P2o6 Asu-Mir-10-P2o7 Asu-Mir-10-P2o8 Asu-Mir-10-P3 Asu-Mir-10-P4

Orthologues

Aae-Mir-10-P2 Adi-Mir-10 Aga-Mir-10-P2 Agr-Mir-10-P2 Asp-Mir-10 Bfl-Mir-10-P2-v1 Bfl-Mir-10-P2-v2 Bge-Mir-10-P2 Bko-Mir-10-P2 Bla-Mir-10-P2-v1 Bla-Mir-10-P2-v2 Bpl-Mir-10-P2 Cbr-Mir-10-P2 Cel-Mir-10-P2 Cin-Mir-10-P2 Cte-Mir-10-P2 Dan-Mir-10-P2 Dgr-Mir-10-P2 Dlo-Mir-10-P2 Dma-Mir-10-P2 Dme-Mir-10-P2 Dmo-Mir-10-P2 Dpu-Mir-10-P2 Dsi-Mir-10-P2 Dya-Mir-10-P2 Eba-Mir-10-P2 Gpa-Mir-10-P2 Gsp-Mir-10-P2 Hru-Mir-10-P2 Isc-Mir-10-P2 Lan-Mir-10-P2 Lgi-Mir-10-P2 Lhy-Mir-10-P2 Llo-Mir-10-P2 Lpo-Mir-10-P2o Mgi-Mir-10-P2 Mom-Mir-10-P2 Npo-Mir-10-P2 Nve-Mir-10 Obi-Mir-10-P2 Ofu-Mir-10-P2 Ovu-Mir-10-P2 Pau-Mir-10-P2 Pca-Mir-10-P2 Pdu-Mir-10-P2 Pfl-Mir-10-P2 Ple-Mir-10-P2 Pmi-Mir-10-P2 Pve-Mir-10-P2 Rph-Mir-10-P2 Sko-Mir-10-P2 Snu-Mir-10-P2 Tca-Mir-10-P2 Tur-Mir-10-P2 Xbo-Mir-10-P2 Xbo-Mir-10-P2-as

Node of Origin (locus)

A.suum

Node of Origin (family)

Eumetazoa

Genome context
(ASU_PRJNA80881_plustraces)

Scaffold883: 121212-121269 [+]

Clustered miRNAs
(< 50kb from Mir-10-P2o4)

Mir-10-P2o4 Scaffold883: 121212-121269 [+]
Mir-10-P2o3 Scaffold883: 122323-122381 [+]

Precursor
(pre-Mir +30nt flank)

UUGGUGGUGGCAUUUAGCCGGUGUGCGGUGUACCCGUAGCUCCGAAAUCGUGUCAGCAUUUGAAUACACGUUUCGUUGCUCGGGUGCCCUGCGCAUAUUUCCGGGGUCUGAGCUGCCU

Get precursor sequence

Structure

        10        20          30        40        50         
UUGGUGGUGGCAUUUAGCCG--|       U       U   UC     U     CAGCA 
                      GUGUGCGG GUACCCG AGC  CGAAA CGUGU     U
                      UACGCGUC CGUGGGC UCG  GCUUU GCACA     U
UCCGUCGAGUCUGGGGCCUUUA^       C       -   UU     -     UAAGU 
      110       100        90         80         70        60