MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-10-P2b

Family name MIR-10 (all species)
Seed ACCCGUA
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-99b
Paralogues Cpi-Mir-10-P1b-v1  Cpi-Mir-10-P1b-v2  Cpi-Mir-10-P1c-v1  Cpi-Mir-10-P1c-v2  Cpi-Mir-10-P1d-v1  Cpi-Mir-10-P1d-v2  Cpi-Mir-10-P2c  Cpi-Mir-10-P2d  Cpi-Mir-10-P3b  Cpi-Mir-10-P3c  Cpi-Mir-10-P3d 
Orthologues Aae-Mir-10-P2  Aca-Mir-10-P2b  Adi-Mir-10  Aga-Mir-10-P2  Agr-Mir-10-P2  Ami-Mir-10-P2b  Asp-Mir-10  Bfl-Mir-10-P2-v1  Bfl-Mir-10-P2-v2  Bge-Mir-10-P2  Bko-Mir-10-P2  Bla-Mir-10-P2-v1  Bla-Mir-10-P2-v2  Bpl-Mir-10-P2  Bta-Mir-10-P2b  Cbr-Mir-10-P2  Cel-Mir-10-P2  Cfa-Mir-10-P2b  Cin-Mir-10-P2  Cja-Mir-10-P2b  Cpo-Mir-10-P2b  Cte-Mir-10-P2  Dan-Mir-10-P2  Dgr-Mir-10-P2  Dlo-Mir-10-P2  Dma-Mir-10-P2  Dme-Mir-10-P2  Dmo-Mir-10-P2  Dpu-Mir-10-P2  Dsi-Mir-10-P2  Dya-Mir-10-P2  Eba-Mir-10-P2  Eca-Mir-10-P2b  Ete-Mir-10-P2b  Gja-Mir-10-P2b  Gpa-Mir-10-P2  Gsp-Mir-10-P2  Hru-Mir-10-P2  Hsa-Mir-10-P2b  Isc-Mir-10-P2  Laf-Mir-10-P2b  Lan-Mir-10-P2  Lch-Mir-10-P2b  Lgi-Mir-10-P2  Lhy-Mir-10-P2  Llo-Mir-10-P2  Mgi-Mir-10-P2  Mml-Mir-10-P2b  Mmr-Mir-10-P2b  Mmu-Mir-10-P2b  Mom-Mir-10-P2  Mun-Mir-10-P2b  Neu-Mir-10-P2b  Npo-Mir-10-P2  Nve-Mir-10  Oan-Mir-10-P2b  Obi-Mir-10-P2  Ocu-Mir-10-P2b  Ofu-Mir-10-P2  Ovu-Mir-10-P2  Pab-Mir-10-P2b  Pau-Mir-10-P2  Pbv-Mir-10-P2b  Pca-Mir-10-P2  Pdu-Mir-10-P2  Pfl-Mir-10-P2  Ple-Mir-10-P2  Pmi-Mir-10-P2  Pve-Mir-10-P2  Rno-Mir-10-P2b  Rph-Mir-10-P2  Sha-Mir-10-P2b  Sko-Mir-10-P2  Snu-Mir-10-P2  Spt-Mir-10-P2b  Sto-Mir-10-P2b  Tca-Mir-10-P2  Tur-Mir-10-P2  Xbo-Mir-10-P2  Xbo-Mir-10-P2-as  Xla-Mir-10-P2b1  Xla-Mir-10-P2b2  Xtr-Mir-10-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(chrPic1)		 JH585122: 291497-291556 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P2b)		 Mir-10-P2b JH585122: 291497-291556 [+] UCSC Ensembl
Let-7-P1b JH585122: 293024-293091 [+] UCSC Ensembl
Mir-10-P3b JH585122: 302630-302690 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGUCCCGCCGCGGCGUUGCCGGUUGCCAUAAACCCGUAGAUCCGAACUUGCGGUACGACUGCCUCACACAAGCUCGAGUCUGUGGGUAUGUGUCGAUCCUGGCCAGGACAUCUGGAGACC
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Structure
        10        20          30        40        50         
GGUCCCGCCGCGGCGUUG  -  -|  C    A         UC   A    CGGUACGA 
                  CC GG UUG CAUA ACCCGUAGA  CGA CUUG        C
                  GG CC AGC GUGU UGGGUGUCU  GCU GAAC        U
CCAGAGGUCUACAGGACC  U  U^  U    A         GA   C    ACACUCCG 
.       110       100        90        80        70        60
Deep sequencing
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CommentBased on the 3' DcRNA reads in human (P2b) and platypus (P2c) it appears that this is a Group 2 miRNA.
3' NTU Yes
MotifsUG at 5p(-14)
Tissue expression
-   +
Te Te Te To
Mature sequence

Cpi-Mir-10-P2b_5p
mirBase accessionMIMAT0037712
Sequence 
0- AACCCGUAGAUCCGAACUUGCG -22
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Star sequence

Cpi-Mir-10-P2b_3p*
mirBase accessionMIMAT0037713
Sequence 
38- CAAGCUCGAGUCUGUGGGUAUG -60
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